Result of FASTA (ccds) for
pFN21AE3944
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3944, 259 aa
1>>>pF1KE3944 259 - 259 aa - 259 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7061+/-0.000973; mu= 12.2193+/- 0.058
mean_var=65.6774+/-12.934, 0's: 0 Z-trim(104.7): 53 B-trim: 7 in 1/48
Lambda= 0.158258
statistics sampled from 7995 (8047) to 7995 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.247), width: 16
Scan time: 2.140
The best scores are: opt bits E(32554)
CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 ( 259) 1700 397.0 6.8e-111
CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 ( 237) 322 82.4 3.2e-16
CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 ( 260) 312 80.1 1.7e-15
CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 ( 234) 302 77.8 7.5e-15
CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 ( 283) 302 77.8 9e-15
CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 ( 257) 288 74.6 7.5e-14
CCDS9128.1 KCTD10 gene_id:83892|Hs108|chr12 ( 313) 246 65.0 6.9e-11
>>CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 (259 aa)
initn: 1700 init1: 1700 opt: 1700 Z-score: 2104.4 bits: 397.0 E(32554): 6.8e-111
Smith-Waterman score: 1700; 99.6% identity (100.0% similar) in 259 aa overlap (1-259:1-259)
10 20 30 40 50 60
pF1KE3 MERKINRREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MERKINRREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 GIVNGKILCPFDADGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 GIVNGKILCPFDADGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GLAEEVKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 GLAEEVKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DGFPEEFSISSNIIRFKYFIKSENGTRLVLKEDNTFVCTLETLKFEAIMMALKCGFRLLT
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS93 DGFPEEFSISSNIIQFKYFIKSENGTRLVLKEDNTFVCTLETLKFEAIMMALKCGFRLLT
190 200 210 220 230 240
250
pF1KE3 SLDCSKGSIVHSDALHFIK
:::::::::::::::::::
CCDS93 SLDCSKGSIVHSDALHFIK
250
>>CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 (237 aa)
initn: 306 init1: 306 opt: 322 Z-score: 404.6 bits: 82.4 E(32554): 3.2e-16
Smith-Waterman score: 322; 39.7% identity (70.5% similar) in 156 aa overlap (35-188:14-161)
10 20 30 40 50 60
pF1KE3 INRREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVN
.::::::.:: :. :::.:::..: .. .
CCDS28 MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFG
10 20 30 40
70 80 90 100 110 120
pF1KE3 GKILCPFDADGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAE
: . : .:.::::::: :::.::::::..:: :: :.: .:: .::.:.:.. : .
CCDS28 GDFPTARDPQGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQ
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 EVKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSK--SRLDG
.. . . : : .: : :... . .. : . : : .. : .......: : :.:
CCDS28 CLN---DPKPLYPMDT-FEEVVE-LSSTRKLSKYSN-P--VAVIITQLTITTKVHSLLEG
110 120 130 140 150
190 200 210 220 230 240
pF1KE3 FPEEFSISSNIIRFKYFIKSENGTRLVLKEDNTFVCTLETLKFEAIMMALKCGFRLLTSL
. . :.
CCDS28 ISNYFTKWNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSE
160 170 180 190 200 210
>>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 (260 aa)
initn: 343 init1: 299 opt: 312 Z-score: 391.7 bits: 80.1 E(32554): 1.7e-15
Smith-Waterman score: 312; 42.9% identity (73.7% similar) in 133 aa overlap (35-166:5-135)
10 20 30 40 50 60
pF1KE3 INRREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVN
.:::::: :: :. :::..::..: .. .
CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFS
10 20 30
70 80 90 100 110 120
pF1KE3 GKILCPFDADGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAE
::. :..:. :::::: .::..:::::...: ::: :.: :: .::.:.:.. : :
CCDS31 GKMPTKRDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 EVKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFC-NAPDFISKIKSRIVLVSKSRLDGF
.. . : : .....:.:: :. : : ... .::.. :
CCDS31 ALQEK-EVELSKAEKNAMLNITLNQ-RVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 PEEFSISSNIIRFKYFIKSENGTRLVLKEDNTFVCTLETLKFEAIMMALKCGFRLLTSLD
CCDS31 CLFLKLLGSKLFYCSNGNLSSITSHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVVP
160 170 180 190 200 210
>>CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 (234 aa)
initn: 281 init1: 200 opt: 302 Z-score: 380.1 bits: 77.8 E(32554): 7.5e-15
Smith-Waterman score: 302; 43.8% identity (77.1% similar) in 105 aa overlap (37-140:60-163)
10 20 30 40 50 60
pF1KE3 RREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVNGK
..:::..: .. :::::::. . . ::
CCDS12 LSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPDSRISRLFNGT
30 40 50 60 70 80
70 80 90 100 110 120
pF1KE3 ILCPFDA-DGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAEE
.:. :::::::: .::.::.:::...::::. :.. .:: .::...::. ...:
CCDS12 EPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPMVRE
90 100 110 120 130 140
130 140 150 160 170 180
pF1KE3 VKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRLDGFPE
.. ::..:: :..
CCDS12 LE-RWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVNAG
150 160 170 180 190 200
>>CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 (283 aa)
initn: 299 init1: 200 opt: 302 Z-score: 378.7 bits: 77.8 E(32554): 9e-15
Smith-Waterman score: 302; 43.8% identity (77.1% similar) in 105 aa overlap (37-140:60-163)
10 20 30 40 50 60
pF1KE3 RREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVNGK
..:::..: .. :::::::. . . ::
CCDS46 LSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPDSRISRLFNGT
30 40 50 60 70 80
70 80 90 100 110 120
pF1KE3 ILCPFDA-DGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAEE
.:. :::::::: .::.::.:::...::::. :.. .:: .::...::. ...:
CCDS46 EPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPMVRE
90 100 110 120 130 140
130 140 150 160 170 180
pF1KE3 VKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRLDGFPE
.. ::..:: :..
CCDS46 LE-RWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVNAG
150 160 170 180 190 200
>>CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 (257 aa)
initn: 306 init1: 202 opt: 288 Z-score: 362.1 bits: 74.6 E(32554): 7.5e-14
Smith-Waterman score: 288; 41.7% identity (74.8% similar) in 103 aa overlap (37-138:34-135)
10 20 30 40 50 60
pF1KE3 RREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVNGK
..:::..: .. ::::::.. . . .:
CCDS11 PLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLFDGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ILCPFDA-DGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAEE
.:. :::::::: .::..:::::...::.:. :.. :: .::..:::. . :
CCDS11 EPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPMLLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRLDGFPE
.. ::.... : :
CCDS11 ME-RWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVNAG
130 140 150 160 170 180
>>CCDS9128.1 KCTD10 gene_id:83892|Hs108|chr12 (313 aa)
initn: 244 init1: 176 opt: 246 Z-score: 308.9 bits: 65.0 E(32554): 6.9e-11
Smith-Waterman score: 246; 39.8% identity (66.4% similar) in 113 aa overlap (26-137:25-136)
10 20 30 40 50 60
pF1KE3 MERKINRREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLE
.: . .: . ::::: :: : ::::: ::.:.
CCDS91 MEEMSGESVVSSAVPAAATRTTSFKGTSPSSKYVKLNVGGALYYTTMQTLTKQ-DTMLK
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 GIVNGKILCPFDADGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLK
.. .:.. :..: .::: : : .::.::.: . :::. :: . : ::... ..
CCDS91 AMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGAVPLPESRREIEELLAEAKYYLVQ
60 70 80 90 100 110
130 140 150 160 170
pF1KE3 GLAEEVKSRWE-KEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSR
::.:: .. . :. :
CCDS91 GLVEECQAALQNKDTYEPFCKVPVITSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNS
120 130 140 150 160 170
259 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:43:13 2016 done: Sun Nov 6 08:43:13 2016
Total Scan time: 2.140 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]