FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3943, 374 aa
  1>>>pF1KE3943 374 - 374 aa - 374 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6469+/-0.000767; mu= 15.1858+/- 0.046
 mean_var=81.4181+/-16.403, 0's: 0 Z-trim(108.9): 20  B-trim: 0 in 0/51
 Lambda= 0.142139
 statistics sampled from 10526 (10540) to 10526 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.324), width:  16
 Scan time:  3.110

The best scores are:                                      opt bits E(32554)
CCDS10831.1 FBXL8 gene_id:55336|Hs108|chr16        ( 374) 2500 522.2 2.8e-148


>>CCDS10831.1 FBXL8 gene_id:55336|Hs108|chr16             (374 aa)
 initn: 2500 init1: 2500 opt: 2500  Z-score: 2775.5  bits: 522.2 E(32554): 2.8e-148
Smith-Waterman score: 2500; 100.0% identity (100.0% similar) in 374 aa overlap (1-374:1-374)

               10        20        30        40        50        60
pF1KE3 MAEPGEGLPEEVLALIFRHLSLRDRAAAARVCRAWAAAATCSAVWHDTKISCECELEGML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAEPGEGLPEEVLALIFRHLSLRDRAAAARVCRAWAAAATCSAVWHDTKISCECELEGML
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 PPYLSACLDHIHNLRLEFEPSRKPSRRAAIELLMVLAGRAPGLRGLRLECRGEKPLFDAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PPYLSACLDHIHNLRLEFEPSRKPSRRAAIELLMVLAGRAPGLRGLRLECRGEKPLFDAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 RDVLEAVHAVCGAASQLRHLDLRRLSFTLDDALVLQAARSCPELHSLFLDNSTLVGSVGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RDVLEAVHAVCGAASQLRHLDLRRLSFTLDDALVLQAARSCPELHSLFLDNSTLVGSVGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 GSVLELLEACPRLRALGLHLASLSHAILEALAAPDRAPFALLALRCACPEDARASPLPNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GSVLELLEACPRLRALGLHLASLSHAILEALAAPDRAPFALLALRCACPEDARASPLPNE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 AWVALRRRHPGLAVELELEPALPAESVTRVLQPAVPVAALRLNLSGDTVGPVRFAAHHYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AWVALRRRHPGLAVELELEPALPAESVTRVLQPAVPVAALRLNLSGDTVGPVRFAAHHYA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 ATLCALEVRAAASAELNAALEELAARCAALREVHCFCVVSHSVLDAFRAHCPRLRTYTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ATLCALEVRAAASAELNAALEELAARCAALREVHCFCVVSHSVLDAFRAHCPRLRTYTLK
              310       320       330       340       350       360

              370    
pF1KE3 LTREPHPWRPTLVA
       ::::::::::::::
CCDS10 LTREPHPWRPTLVA
              370    




374 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:43:41 2016 done: Sun Nov  6 08:43:41 2016
 Total Scan time:  3.110 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]