FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3942, 433 aa
  1>>>pF1KE3942 433 - 433 aa - 433 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0689+/-0.000881; mu= 15.3678+/- 0.052
 mean_var=121.3492+/-25.705, 0's: 0 Z-trim(110.1): 56  B-trim: 432 in 1/50
 Lambda= 0.116428
 statistics sampled from 11345 (11396) to 11345 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.35), width:  16
 Scan time:  3.470

The best scores are:                                      opt bits E(32554)
CCDS8419.1 RNF26 gene_id:79102|Hs108|chr11         ( 433) 2846 489.1 3.5e-138


>>CCDS8419.1 RNF26 gene_id:79102|Hs108|chr11              (433 aa)
 initn: 2846 init1: 2846 opt: 2846  Z-score: 2594.3  bits: 489.1 E(32554): 3.5e-138
Smith-Waterman score: 2846; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:1-433)

               10        20        30        40        50        60
pF1KE3 MEAVYLVVNGLGLVLDVLTLVLDLNFLLVSSLLASLAWLLAFVYNLPHTVLTSLLHLGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MEAVYLVVNGLGLVLDVLTLVLDLNFLLVSSLLASLAWLLAFVYNLPHTVLTSLLHLGRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VLLSLLALIEAVVRFTCGGLQALCTLLYSCCSGLESLKLLGHLASHGALRSREILHRGVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VLLSLLALIEAVVRFTCGGLQALCTLLYSCCSGLESLKLLGHLASHGALRSREILHRGVL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 NVVSSGHALLRQACDICAIAMSLVAYVINSLVNICLIGTQNLFSLVLALWDAVTGPLWRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 NVVSSGHALLRQACDICAIAMSLVAYVINSLVNICLIGTQNLFSLVLALWDAVTGPLWRM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TDVVAAFLAHISSSAVAMAILLWTPCQLALELLASAARLLASFVLVNLTGLVLLACVLAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 TDVVAAFLAHISSSAVAMAILLWTPCQLALELLASAARLLASFVLVNLTGLVLLACVLAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 TVTVLHPDFTLRLATQALSQLHARPSYHRLREDVMRLSRLALGSEAWRRVWSRSLQLASW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 TVTVLHPDFTLRLATQALSQLHARPSYHRLREDVMRLSRLALGSEAWRRVWSRSLQLASW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 PNRGGAPGAPQGDPMRVFSVRTRRQDTLPEAGRRSEAEEEEARTIRVTPVRGRERLNEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 PNRGGAPGAPQGDPMRVFSVRTRRQDTLPEAGRRSEAEEEEARTIRVTPVRGRERLNEEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 PPGGQDPWKLLKEQEERKKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 PPGGQDPWKLLKEQEERKKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPL
              370       380       390       400       410       420

              430   
pF1KE3 CRRGILQTLNVYL
       :::::::::::::
CCDS84 CRRGILQTLNVYL
              430   




433 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:44:17 2016 done: Sun Nov  6 08:44:17 2016
 Total Scan time:  3.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]