Result of FASTA (omim) for
pFN21AE3940
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3940, 148 aa
1>>>pF1KE3940 148 - 148 aa - 148 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0130+/-0.000414; mu= 12.7527+/- 0.026
mean_var=57.7589+/-12.137, 0's: 0 Z-trim(111.0): 15 B-trim: 941 in 1/50
Lambda= 0.168758
statistics sampled from 19413 (19423) to 19413 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.228), width: 16
Scan time: 4.740
The best scores are: opt bits E(85289)
NP_001243441 (OMIM: 600439) single-stranded DNA-bi ( 148) 963 242.6 1.7e-64
NP_003134 (OMIM: 600439) single-stranded DNA-bindi ( 148) 963 242.6 1.7e-64
NP_001243439 (OMIM: 600439) single-stranded DNA-bi ( 148) 963 242.6 1.7e-64
NP_001243440 (OMIM: 600439) single-stranded DNA-bi ( 148) 963 242.6 1.7e-64
NP_001243442 (OMIM: 600439) single-stranded DNA-bi ( 148) 963 242.6 1.7e-64
XP_005250108 (OMIM: 600439) PREDICTED: single-stra ( 159) 876 221.5 4.3e-58
XP_005250106 (OMIM: 600439) PREDICTED: single-stra ( 159) 876 221.5 4.3e-58
XP_005250105 (OMIM: 600439) PREDICTED: single-stra ( 159) 876 221.5 4.3e-58
XP_005250107 (OMIM: 600439) PREDICTED: single-stra ( 159) 876 221.5 4.3e-58
>>NP_001243441 (OMIM: 600439) single-stranded DNA-bindin (148 aa)
initn: 963 init1: 963 opt: 963 Z-score: 1278.9 bits: 242.6 E(85289): 1.7e-64
Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
70 80 90 100 110 120
130 140
pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE
::::::::::::::::::::::::::::
NP_001 DKNNVRRQATTIIADNIIFLSDQTKEKE
130 140
>>NP_003134 (OMIM: 600439) single-stranded DNA-binding p (148 aa)
initn: 963 init1: 963 opt: 963 Z-score: 1278.9 bits: 242.6 E(85289): 1.7e-64
Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
70 80 90 100 110 120
130 140
pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE
::::::::::::::::::::::::::::
NP_003 DKNNVRRQATTIIADNIIFLSDQTKEKE
130 140
>>NP_001243439 (OMIM: 600439) single-stranded DNA-bindin (148 aa)
initn: 963 init1: 963 opt: 963 Z-score: 1278.9 bits: 242.6 E(85289): 1.7e-64
Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
70 80 90 100 110 120
130 140
pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE
::::::::::::::::::::::::::::
NP_001 DKNNVRRQATTIIADNIIFLSDQTKEKE
130 140
>>NP_001243440 (OMIM: 600439) single-stranded DNA-bindin (148 aa)
initn: 963 init1: 963 opt: 963 Z-score: 1278.9 bits: 242.6 E(85289): 1.7e-64
Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
70 80 90 100 110 120
130 140
pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE
::::::::::::::::::::::::::::
NP_001 DKNNVRRQATTIIADNIIFLSDQTKEKE
130 140
>>NP_001243442 (OMIM: 600439) single-stranded DNA-bindin (148 aa)
initn: 963 init1: 963 opt: 963 Z-score: 1278.9 bits: 242.6 E(85289): 1.7e-64
Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
70 80 90 100 110 120
130 140
pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE
::::::::::::::::::::::::::::
NP_001 DKNNVRRQATTIIADNIIFLSDQTKEKE
130 140
>>XP_005250108 (OMIM: 600439) PREDICTED: single-stranded (159 aa)
initn: 876 init1: 876 opt: 876 Z-score: 1164.0 bits: 221.5 E(85289): 4.3e-58
Smith-Waterman score: 876; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
70 80 90 100 110 120
130 140
pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE
::::::::::::::
XP_005 DKNNVRRQATTIIAGKKLVKIAVFFFFSFSFLKAWLHCN
130 140 150
>>XP_005250106 (OMIM: 600439) PREDICTED: single-stranded (159 aa)
initn: 876 init1: 876 opt: 876 Z-score: 1164.0 bits: 221.5 E(85289): 4.3e-58
Smith-Waterman score: 876; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
70 80 90 100 110 120
130 140
pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE
::::::::::::::
XP_005 DKNNVRRQATTIIAGKKLVKIAVFFFFSFSFLKAWLHCN
130 140 150
>>XP_005250105 (OMIM: 600439) PREDICTED: single-stranded (159 aa)
initn: 876 init1: 876 opt: 876 Z-score: 1164.0 bits: 221.5 E(85289): 4.3e-58
Smith-Waterman score: 876; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
70 80 90 100 110 120
130 140
pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE
::::::::::::::
XP_005 DKNNVRRQATTIIAGKKLVKIAVFFFFSFSFLKAWLHCN
130 140 150
>>XP_005250107 (OMIM: 600439) PREDICTED: single-stranded (159 aa)
initn: 876 init1: 876 opt: 876 Z-score: 1164.0 bits: 221.5 E(85289): 4.3e-58
Smith-Waterman score: 876; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
70 80 90 100 110 120
130 140
pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE
::::::::::::::
XP_005 DKNNVRRQATTIIAGKKLVKIAVFFFFSFSFLKAWLHCN
130 140 150
148 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:45:37 2016 done: Sun Nov 6 08:45:38 2016
Total Scan time: 4.740 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]