Result of FASTA (omim) for
pFN21AE3936
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3936, 179 aa
1>>>pF1KE3936 179 - 179 aa - 179 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8631+/-0.000502; mu= 15.4374+/- 0.031
mean_var=90.9480+/-20.676, 0's: 0 Z-trim(111.0): 233 B-trim: 1180 in 2/49
Lambda= 0.134486
statistics sampled from 19092 (19472) to 19092 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.608), E-opt: 0.2 (0.228), width: 16
Scan time: 4.380
The best scores are: opt bits E(85289)
NP_848930 (OMIM: 608909) ADP-ribosylation factor-l ( 179) 1191 241.1 7.1e-64
NP_036229 (OMIM: 608960) ADP-ribosylation factor-l ( 179) 1010 206.0 2.6e-53
XP_005252458 (OMIM: 608909) PREDICTED: ADP-ribosyl ( 142) 945 193.3 1.4e-49
NP_817114 (OMIM: 608960) ADP-ribosylation factor-l ( 142) 816 168.2 4.9e-42
NP_001032251 (OMIM: 608960) ADP-ribosylation facto ( 142) 816 168.2 4.9e-42
NP_001019398 (OMIM: 103180) ADP-ribosylation facto ( 181) 611 128.6 5.4e-30
NP_001019397 (OMIM: 103180) ADP-ribosylation facto ( 181) 611 128.6 5.4e-30
NP_001649 (OMIM: 103180) ADP-ribosylation factor 1 ( 181) 611 128.6 5.4e-30
NP_001019399 (OMIM: 103180) ADP-ribosylation facto ( 181) 611 128.6 5.4e-30
XP_005268913 (OMIM: 103190) PREDICTED: ADP-ribosyl ( 181) 598 126.1 3.1e-29
NP_001650 (OMIM: 103190) ADP-ribosylation factor 3 ( 181) 598 126.1 3.1e-29
NP_001168 (OMIM: 603425) ADP-ribosylation factor-l ( 181) 577 122.0 5.2e-28
XP_005252457 (OMIM: 608909) PREDICTED: ADP-ribosyl ( 151) 567 120.0 1.8e-27
NP_001651 (OMIM: 601177) ADP-ribosylation factor 4 ( 180) 564 119.5 3e-27
NP_001653 (OMIM: 103188) ADP-ribosylation factor 5 ( 180) 559 118.5 5.8e-27
NP_001654 (OMIM: 600464) ADP-ribosylation factor 6 ( 175) 552 117.1 1.5e-26
XP_016871749 (OMIM: 604695) PREDICTED: ADP-ribosyl ( 182) 506 108.2 7.3e-24
NP_004302 (OMIM: 604695) ADP-ribosylation factor-l ( 182) 506 108.2 7.3e-24
NP_001658 (OMIM: 601175) ADP-ribosylation factor-l ( 184) 489 104.9 7.3e-23
XP_005248554 (OMIM: 601747) PREDICTED: E3 ubiquiti ( 398) 484 104.3 2.4e-22
NP_001647 (OMIM: 601747) E3 ubiquitin-protein liga ( 574) 484 104.5 3e-22
NP_079323 (OMIM: 614439) ADP-ribosylation factor-l ( 192) 475 102.2 4.9e-22
NP_997625 (OMIM: 604786) ADP-ribosylation factor-l ( 200) 453 98.0 9.7e-21
NP_001032241 (OMIM: 604786) ADP-ribosylation facto ( 200) 453 98.0 9.7e-21
NP_001182325 (OMIM: 604786) ADP-ribosylation facto ( 200) 453 98.0 9.7e-21
NP_005729 (OMIM: 604786) ADP-ribosylation factor-l ( 200) 453 98.0 9.7e-21
XP_016856722 (OMIM: 103180) PREDICTED: ADP-ribosyl ( 212) 452 97.8 1.2e-20
XP_006719454 (OMIM: 103190) PREDICTED: ADP-ribosyl ( 137) 441 95.5 3.8e-20
NP_001287997 (OMIM: 603425) ADP-ribosylation facto ( 135) 430 93.3 1.7e-19
NP_001265222 (OMIM: 209900,268000,600151,608845,61 ( 186) 427 92.9 3.1e-19
NP_816931 (OMIM: 209900,268000,600151,608845,61357 ( 186) 427 92.9 3.1e-19
NP_115522 (OMIM: 209900,268000,600151,608845,61357 ( 186) 427 92.9 3.1e-19
XP_016862800 (OMIM: 209900,268000,600151,608845,61 ( 186) 427 92.9 3.1e-19
NP_150230 (OMIM: 601747) E3 ubiquitin-protein liga ( 569) 430 94.0 4.2e-19
XP_016864933 (OMIM: 601747) PREDICTED: E3 ubiquiti ( 569) 430 94.0 4.2e-19
NP_001310442 (OMIM: 209900,268000,600151,608845,61 ( 193) 423 92.2 5.4e-19
NP_005728 (OMIM: 604787) ADP-ribosylation factor-l ( 192) 422 92.0 6.1e-19
NP_001269360 (OMIM: 604787) ADP-ribosylation facto ( 201) 422 92.0 6.3e-19
NP_001652 (OMIM: 600732) ADP-ribosylation factor-l ( 201) 410 89.6 3.2e-18
XP_011523084 (OMIM: 600732) PREDICTED: ADP-ribosyl ( 201) 410 89.6 3.2e-18
NP_612459 (OMIM: 609351) ADP-ribosylation factor-l ( 196) 404 88.5 7e-18
XP_005266310 (OMIM: 609351) PREDICTED: ADP-ribosyl ( 196) 404 88.5 7e-18
NP_150231 (OMIM: 601747) E3 ubiquitin-protein liga ( 546) 404 89.0 1.4e-17
XP_016883065 (OMIM: 604699) PREDICTED: ADP-ribosyl ( 201) 391 86.0 4.1e-17
XP_011526784 (OMIM: 604699) PREDICTED: ADP-ribosyl ( 201) 391 86.0 4.1e-17
NP_001254476 (OMIM: 604699) ADP-ribosylation facto ( 201) 391 86.0 4.1e-17
NP_001254477 (OMIM: 604699) ADP-ribosylation facto ( 201) 391 86.0 4.1e-17
NP_003215 (OMIM: 604699) ADP-ribosylation factor-r ( 201) 391 86.0 4.1e-17
XP_011526785 (OMIM: 604699) PREDICTED: ADP-ribosyl ( 201) 391 86.0 4.1e-17
XP_016862801 (OMIM: 209900,268000,600151,608845,61 ( 159) 368 81.4 7.7e-16
>>NP_848930 (OMIM: 608909) ADP-ribosylation factor-like (179 aa)
initn: 1191 init1: 1191 opt: 1191 Z-score: 1267.7 bits: 241.1 E(85289): 7.1e-64
Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)
10 20 30 40 50 60
pF1KE3 MGLIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 MGLIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 HFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 HFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAV
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 LIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 LIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
130 140 150 160 170
>>NP_036229 (OMIM: 608960) ADP-ribosylation factor-like (179 aa)
initn: 1010 init1: 1010 opt: 1010 Z-score: 1077.9 bits: 206.0 E(85289): 2.6e-53
Smith-Waterman score: 1010; 79.9% identity (95.0% similar) in 179 aa overlap (1-179:1-179)
10 20 30 40 50 60
pF1KE3 MGLIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNT
::..:...: :: .:::::::::::::::::::::: :::::::::::::::::::..::
NP_036 MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 HFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAV
.::::::::::::::::::::.::::.:.:::: ::::...:.::::.::::::::::..
NP_036 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 LIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
::::::::.: :::.::::..: :.::::: ::::.:::::::::::::::: ::. .:
NP_036 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR
130 140 150 160 170
>>XP_005252458 (OMIM: 608909) PREDICTED: ADP-ribosylatio (142 aa)
initn: 945 init1: 945 opt: 945 Z-score: 1011.0 bits: 193.3 E(85289): 1.4e-49
Smith-Waterman score: 945; 100.0% identity (100.0% similar) in 142 aa overlap (38-179:1-142)
10 20 30 40 50 60
pF1KE3 LWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDI
::::::::::::::::::::::::::::::
XP_005 MNEVVHTSPTIGSNVEEIVVKNTHFLMWDI
10 20 30
70 80 90 100 110 120
pF1KE3 GGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQ
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 DMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
100 110 120 130 140
>>NP_817114 (OMIM: 608960) ADP-ribosylation factor-like (142 aa)
initn: 816 init1: 816 opt: 816 Z-score: 875.7 bits: 168.2 E(85289): 4.9e-42
Smith-Waterman score: 816; 81.0% identity (95.8% similar) in 142 aa overlap (38-179:1-142)
10 20 30 40 50 60
pF1KE3 LWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDI
:::::::::::::::::::..::.::::::
NP_817 MNEVVHTSPTIGSNVEEIVINNTRFLMWDI
10 20 30
70 80 90 100 110 120
pF1KE3 GGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQ
::::::::::::::.::::.:.:::: ::::...:.::::.::::::::::..:::::::
NP_817 GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 DMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
:.: :::.::::..: :.::::: ::::.:::::::::::::::: ::. .:
NP_817 DVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR
100 110 120 130 140
>>NP_001032251 (OMIM: 608960) ADP-ribosylation factor-li (142 aa)
initn: 816 init1: 816 opt: 816 Z-score: 875.7 bits: 168.2 E(85289): 4.9e-42
Smith-Waterman score: 816; 81.0% identity (95.8% similar) in 142 aa overlap (38-179:1-142)
10 20 30 40 50 60
pF1KE3 LWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDI
:::::::::::::::::::..::.::::::
NP_001 MNEVVHTSPTIGSNVEEIVINNTRFLMWDI
10 20 30
70 80 90 100 110 120
pF1KE3 GGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQ
::::::::::::::.::::.:.:::: ::::...:.::::.::::::::::..:::::::
NP_001 GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 DMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
:.: :::.::::..: :.::::: ::::.:::::::::::::::: ::. .:
NP_001 DVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR
100 110 120 130 140
>>NP_001019398 (OMIM: 103180) ADP-ribosylation factor 1 (181 aa)
initn: 609 init1: 588 opt: 611 Z-score: 659.5 bits: 128.6 E(85289): 5.4e-30
Smith-Waterman score: 611; 50.3% identity (80.2% similar) in 177 aa overlap (1-176:1-177)
10 20 30 40 50
pF1KE3 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN
:: :::.:.. :: ..: ....:::: ::::::::.. ..:.: : :::: ::: . ::
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA
: .::.:::...: : :..::. .:.:::: ::::. ..:::.::::...:: :.
NP_001 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
.:.::::::. . :.::::. : : :.. . :.::. :: .:.:: .::.:.....
NP_001 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
130 140 150 160 170 180
NP_001 K
>>NP_001019397 (OMIM: 103180) ADP-ribosylation factor 1 (181 aa)
initn: 609 init1: 588 opt: 611 Z-score: 659.5 bits: 128.6 E(85289): 5.4e-30
Smith-Waterman score: 611; 50.3% identity (80.2% similar) in 177 aa overlap (1-176:1-177)
10 20 30 40 50
pF1KE3 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN
:: :::.:.. :: ..: ....:::: ::::::::.. ..:.: : :::: ::: . ::
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA
: .::.:::...: : :..::. .:.:::: ::::. ..:::.::::...:: :.
NP_001 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
.:.::::::. . :.::::. : : :.. . :.::. :: .:.:: .::.:.....
NP_001 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
130 140 150 160 170 180
NP_001 K
>>NP_001649 (OMIM: 103180) ADP-ribosylation factor 1 [Ho (181 aa)
initn: 609 init1: 588 opt: 611 Z-score: 659.5 bits: 128.6 E(85289): 5.4e-30
Smith-Waterman score: 611; 50.3% identity (80.2% similar) in 177 aa overlap (1-176:1-177)
10 20 30 40 50
pF1KE3 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN
:: :::.:.. :: ..: ....:::: ::::::::.. ..:.: : :::: ::: . ::
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA
: .::.:::...: : :..::. .:.:::: ::::. ..:::.::::...:: :.
NP_001 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
.:.::::::. . :.::::. : : :.. . :.::. :: .:.:: .::.:.....
NP_001 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
130 140 150 160 170 180
NP_001 K
>>NP_001019399 (OMIM: 103180) ADP-ribosylation factor 1 (181 aa)
initn: 609 init1: 588 opt: 611 Z-score: 659.5 bits: 128.6 E(85289): 5.4e-30
Smith-Waterman score: 611; 50.3% identity (80.2% similar) in 177 aa overlap (1-176:1-177)
10 20 30 40 50
pF1KE3 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN
:: :::.:.. :: ..: ....:::: ::::::::.. ..:.: : :::: ::: . ::
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA
: .::.:::...: : :..::. .:.:::: ::::. ..:::.::::...:: :.
NP_001 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
.:.::::::. . :.::::. : : :.. . :.::. :: .:.:: .::.:.....
NP_001 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
130 140 150 160 170 180
NP_001 K
>>XP_005268913 (OMIM: 103190) PREDICTED: ADP-ribosylatio (181 aa)
initn: 598 init1: 583 opt: 598 Z-score: 645.9 bits: 126.1 E(85289): 3.1e-29
Smith-Waterman score: 598; 49.7% identity (79.7% similar) in 177 aa overlap (1-176:1-177)
10 20 30 40 50
pF1KE3 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN
:: ::..: ::. ..: ....:::: ::::::::.. ..:.: : :::: ::: . ::
XP_005 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA
: .::.:::...: : :..::. .:.:::: ::::. ..:::.::::...:: :.
XP_005 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
.:.::::::. . :.::::. : : :.. . :.::. :: .:.:: .::.:.....
XP_005 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
130 140 150 160 170 180
XP_005 K
179 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:47:30 2016 done: Sun Nov 6 08:47:31 2016
Total Scan time: 4.380 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]