FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3932, 192 aa
  1>>>pF1KE3932 192 - 192 aa - 192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1675+/-0.000605; mu= 11.0516+/- 0.037
 mean_var=108.7305+/-22.790, 0's: 0 Z-trim(115.9): 65  B-trim: 942 in 1/50
 Lambda= 0.122998
 statistics sampled from 16406 (16480) to 16406 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.506), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS43866.1 RNF183 gene_id:138065|Hs108|chr9       ( 192) 1352 249.2 1.2e-66


>>CCDS43866.1 RNF183 gene_id:138065|Hs108|chr9            (192 aa)
 initn: 1352 init1: 1352 opt: 1352  Z-score: 1310.2  bits: 249.2 E(32554): 1.2e-66
Smith-Waterman score: 1352; 99.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KE3 MAEQQGRELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAEQQGRELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QPTVLASGQPVTDLPTDTAMLTLLRLEPHHVILEGHQLCLKDQPKSRYFLRQPRVYTLDL
       :::::::::::::::::::::.:::::::::::::::::::::::::::::::.::::::
CCDS43 QPTVLASGQPVTDLPTDTAMLALLRLEPHHVILEGHQLCLKDQPKSRYFLRQPQVYTLDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GPQPGGQTGPPPDTASATVSTPILIPSHHSLRECFRNPQFRIFAYLMAVILSVTLLLIFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GPQPGGQTGPPPDTASATVSTPILIPSHHSLRECFRNPQFRIFAYLMAVILSVTLLLIFS
              130       140       150       160       170       180

              190  
pF1KE3 IFWTKQFLWGVG
       ::::::::::::
CCDS43 IFWTKQFLWGVG
              190  




192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:49:50 2016 done: Sun Nov  6 08:49:51 2016
 Total Scan time:  2.360 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]