Result of FASTA (omim) for
pFN21AE3927
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3927, 435 aa
1>>>pF1KE3927 435 - 435 aa - 435 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7476+/-0.00043; mu= 14.8063+/- 0.027
mean_var=66.1341+/-13.413, 0's: 0 Z-trim(110.7): 27 B-trim: 23 in 1/50
Lambda= 0.157711
statistics sampled from 19150 (19155) to 19150 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.225), width: 16
Scan time: 7.760
The best scores are: opt bits E(85289)
NP_002544 (OMIM: 602331) origin recognition comple ( 435) 2885 665.6 6.8e-191
NP_859531 (OMIM: 602331) origin recognition comple ( 324) 1966 456.5 4.6e-128
XP_011514575 (OMIM: 602331) PREDICTED: origin reco ( 245) 1525 356.1 5.7e-98
>>NP_002544 (OMIM: 602331) origin recognition complex su (435 aa)
initn: 2885 init1: 2885 opt: 2885 Z-score: 3548.1 bits: 665.6 E(85289): 6.8e-191
Smith-Waterman score: 2885; 100.0% identity (100.0% similar) in 435 aa overlap (1-435:1-435)
10 20 30 40 50 60
pF1KE3 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGLSAHTHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGLSAHTHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 ELPYYSKFILIAAYLASYNPARTDKRFFLKHHGKIKKTNFLKKHEKTSNHLLGPKPFPLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ELPYYSKFILIAAYLASYNPARTDKRFFLKHHGKIKKTNFLKKHEKTSNHLLGPKPFPLD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 RLLAILYSIVDSRVAPTANIFSQITSLVTLQLLTLVGHDDQLDGPKYKCTVSLDFIRAIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RLLAILYSIVDSRVAPTANIFSQITSLVTLQLLTLVGHDDQLDGPKYKCTVSLDFIRAIA
370 380 390 400 410 420
430
pF1KE3 RTVNFDIIKYLYDFL
:::::::::::::::
NP_002 RTVNFDIIKYLYDFL
430
>>NP_859531 (OMIM: 602331) origin recognition complex su (324 aa)
initn: 1966 init1: 1966 opt: 1966 Z-score: 2420.1 bits: 456.5 E(85289): 4.6e-128
Smith-Waterman score: 1966; 99.7% identity (100.0% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE3 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGLSAHTHV
:::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_859 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGIRGSIET
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 ELPYYSKFILIAAYLASYNPARTDKRFFLKHHGKIKKTNFLKKHEKTSNHLLGPKPFPLD
NP_859 VTGDTSSANYQDTKVNTKEHSVRK
310 320
>>XP_011514575 (OMIM: 602331) PREDICTED: origin recognit (245 aa)
initn: 1525 init1: 1525 opt: 1525 Z-score: 1879.8 bits: 356.1 E(85289): 5.7e-98
Smith-Waterman score: 1525; 98.7% identity (99.1% similar) in 232 aa overlap (1-232:1-232)
10 20 30 40 50 60
pF1KE3 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV
:::::::::::::::::::::::::::::::::::::::::::::::: . :
XP_011 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLKMQNSIKIKMRN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGLSAHTHV
XP_011 NRKEM
435 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:52:12 2016 done: Sun Nov 6 08:52:13 2016
Total Scan time: 7.760 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]