FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3927, 435 aa
  1>>>pF1KE3927 435 - 435 aa - 435 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7385+/-0.00102; mu= 14.7488+/- 0.061
 mean_var=60.2120+/-12.411, 0's: 0 Z-trim(103.6): 22  B-trim: 251 in 1/49
 Lambda= 0.165285
 statistics sampled from 7471 (7477) to 7471 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.23), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(32554)
CCDS5734.1 ORC5 gene_id:5001|Hs108|chr7            ( 435) 2885 696.6 1.2e-200
CCDS47681.1 ORC5 gene_id:5001|Hs108|chr7           ( 324) 1966 477.4 8.7e-135


>>CCDS5734.1 ORC5 gene_id:5001|Hs108|chr7                 (435 aa)
 initn: 2885 init1: 2885 opt: 2885  Z-score: 3715.5  bits: 696.6 E(32554): 1.2e-200
Smith-Waterman score: 2885; 100.0% identity (100.0% similar) in 435 aa overlap (1-435:1-435)

               10        20        30        40        50        60
pF1KE3 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGLSAHTHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGLSAHTHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 ELPYYSKFILIAAYLASYNPARTDKRFFLKHHGKIKKTNFLKKHEKTSNHLLGPKPFPLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 ELPYYSKFILIAAYLASYNPARTDKRFFLKHHGKIKKTNFLKKHEKTSNHLLGPKPFPLD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 RLLAILYSIVDSRVAPTANIFSQITSLVTLQLLTLVGHDDQLDGPKYKCTVSLDFIRAIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 RLLAILYSIVDSRVAPTANIFSQITSLVTLQLLTLVGHDDQLDGPKYKCTVSLDFIRAIA
              370       380       390       400       410       420

              430     
pF1KE3 RTVNFDIIKYLYDFL
       :::::::::::::::
CCDS57 RTVNFDIIKYLYDFL
              430     

>>CCDS47681.1 ORC5 gene_id:5001|Hs108|chr7                (324 aa)
 initn: 1966 init1: 1966 opt: 1966  Z-score: 2533.3  bits: 477.4 E(32554): 8.7e-135
Smith-Waterman score: 1966; 99.7% identity (100.0% similar) in 294 aa overlap (1-294:1-294)

               10        20        30        40        50        60
pF1KE3 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGLSAHTHV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.      
CCDS47 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGIRGSIET
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 ELPYYSKFILIAAYLASYNPARTDKRFFLKHHGKIKKTNFLKKHEKTSNHLLGPKPFPLD
                                                                   
CCDS47 VTGDTSSANYQDTKVNTKEHSVRK                                    
              310       320                                        




435 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:52:11 2016 done: Sun Nov  6 08:52:12 2016
 Total Scan time:  2.790 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]