FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3925, 223 aa
  1>>>pF1KE3925 223 - 223 aa - 223 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8389+/-0.000704; mu= 12.0966+/- 0.042
 mean_var=84.1218+/-16.678, 0's: 0 Z-trim(111.6): 38  B-trim: 0 in 0/51
 Lambda= 0.139836
 statistics sampled from 12485 (12523) to 12485 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.385), width:  16
 Scan time:  2.420

The best scores are:                                      opt bits E(32554)
CCDS32465.1 LRRC29 gene_id:26231|Hs108|chr16       ( 223) 1491 309.8 8.9e-85


>>CCDS32465.1 LRRC29 gene_id:26231|Hs108|chr16            (223 aa)
 initn: 1491 init1: 1491 opt: 1491  Z-score: 1635.5  bits: 309.8 E(32554): 8.9e-85
Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)

               10        20        30        40        50        60
pF1KE3 MYSSGWPAGAAEPRHGRGRELAQALGCMHGAPSQLASLSLAHCSSLKSRPELEHQASGTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MYSSGWPAGAAEPRHGRGRELAQALGCMHGAPSQLASLSLAHCSSLKSRPELEHQASGTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DACPEPQGPSLLTLRALQELDLTACSKLTDASLAKVLQFLQLRQLSLSLLPELTDNGLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DACPEPQGPSLLTLRALQELDLTACSKLTDASLAKVLQFLQLRQLSLSLLPELTDNGLVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VARGCPSLEHLALSHCSRLSDKGWAQAASSWPRLQHLNLSSCSQLIEQTLDAIGQACRQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VARGCPSLEHLALSHCSRLSDKGWAQAASSWPRLQHLNLSSCSQLIEQTLDAIGQACRQL
              130       140       150       160       170       180

              190       200       210       220   
pF1KE3 RVLDVATCPGINMAAVRRFQAQLPQVSCVQSRFVGGADLTLTL
       :::::::::::::::::::::::::::::::::::::::::::
CCDS32 RVLDVATCPGINMAAVRRFQAQLPQVSCVQSRFVGGADLTLTL
              190       200       210       220   




223 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:53:24 2016 done: Sun Nov  6 08:53:24 2016
 Total Scan time:  2.420 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]