Result of FASTA (omim) for
pFN21AE3917
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3917, 278 aa
1>>>pF1KE3917 278 - 278 aa - 278 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0921+/-0.000327; mu= 16.2347+/- 0.020
mean_var=69.2058+/-14.179, 0's: 0 Z-trim(117.2): 75 B-trim: 1051 in 2/54
Lambda= 0.154171
statistics sampled from 28892 (28995) to 28892 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.34), width: 16
Scan time: 6.410
The best scores are: opt bits E(85289)
NP_079183 (OMIM: 609094) F-box only protein 17 iso ( 278) 1960 444.6 9.6e-125
NP_680474 (OMIM: 609094) F-box only protein 17 iso ( 287) 1960 444.6 9.9e-125
NP_849142 (OMIM: 609099) F-box only protein 27 [Ho ( 283) 1157 266.0 5.7e-71
XP_016881779 (OMIM: 609099) PREDICTED: F-box only ( 249) 957 221.5 1.3e-57
NP_036300 (OMIM: 607112) F-box only protein 2 [Hom ( 296) 501 120.1 4.9e-27
XP_006710634 (OMIM: 605647) PREDICTED: F-box only ( 293) 492 118.1 2e-26
XP_016856496 (OMIM: 605647) PREDICTED: F-box only ( 293) 492 118.1 2e-26
XP_005263506 (OMIM: 605647) PREDICTED: F-box only ( 293) 492 118.1 2e-26
XP_005263505 (OMIM: 605647) PREDICTED: F-box only ( 293) 492 118.1 2e-26
NP_060908 (OMIM: 605647) F-box only protein 6 [Hom ( 293) 492 118.1 2e-26
XP_011539534 (OMIM: 605647) PREDICTED: F-box only ( 293) 492 118.1 2e-26
XP_005263508 (OMIM: 605647) PREDICTED: F-box only ( 293) 492 118.1 2e-26
NP_001291720 (OMIM: 609111) F-box only protein 44 ( 255) 450 108.7 1.1e-23
XP_016858332 (OMIM: 609111) PREDICTED: F-box only ( 255) 450 108.7 1.1e-23
XP_006711108 (OMIM: 609111) PREDICTED: F-box only ( 255) 450 108.7 1.1e-23
NP_149438 (OMIM: 609111) F-box only protein 44 iso ( 255) 450 108.7 1.1e-23
NP_001014765 (OMIM: 609111) F-box only protein 44 ( 255) 450 108.7 1.1e-23
NP_001001414 (OMIM: 615901) F-box only protein 50 ( 275) 254 65.1 1.6e-10
XP_005263593 (OMIM: 609111) PREDICTED: F-box only ( 256) 172 46.9 4.7e-05
XP_006711106 (OMIM: 609111) PREDICTED: F-box only ( 256) 172 46.9 4.7e-05
XP_011540737 (OMIM: 609111) PREDICTED: F-box only ( 256) 172 46.9 4.7e-05
XP_005263594 (OMIM: 609111) PREDICTED: F-box only ( 256) 172 46.9 4.7e-05
NP_001317284 (OMIM: 609111) F-box only protein 44 ( 256) 172 46.9 4.7e-05
XP_016858331 (OMIM: 609111) PREDICTED: F-box only ( 256) 172 46.9 4.7e-05
NP_904319 (OMIM: 609111) F-box only protein 44 iso ( 224) 164 45.1 0.00015
NP_904320 (OMIM: 609111) F-box only protein 44 iso ( 224) 164 45.1 0.00015
NP_001291719 (OMIM: 609111) F-box only protein 44 ( 224) 164 45.1 0.00015
XP_016858333 (OMIM: 609111) PREDICTED: F-box only ( 224) 164 45.1 0.00015
>>NP_079183 (OMIM: 609094) F-box only protein 17 isoform (278 aa)
initn: 1960 init1: 1960 opt: 1960 Z-score: 2360.5 bits: 444.6 E(85289): 9.6e-125
Smith-Waterman score: 1960; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KE3 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GWEVEHGGNGWAIEKNLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLDSAQIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 GWEVEHGGNGWAIEKNLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLDSAQIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 ICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQVSHVFTNFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 ICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQVSHVFTNFG
190 200 210 220 230 240
250 260 270
pF1KE3 KGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS
::::::::::::::::::::::::::::::::::::::
NP_079 KGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS
250 260 270
>>NP_680474 (OMIM: 609094) F-box only protein 17 isoform (287 aa)
initn: 1960 init1: 1960 opt: 1960 Z-score: 2360.3 bits: 444.6 E(85289): 9.9e-125
Smith-Waterman score: 1960; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:10-287)
10 20 30 40 50
pF1KE3 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRD
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 MKQGLWLLEMGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 IVDGPTVWLLQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 IVDGPTVWLLQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 NSCGEQGFRGWEVEHGGNGWAIEKNLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 NSCGEQGFRGWEVEHGGNGWAIEKNLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 ELLDSAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 ELLDSAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQ
190 200 210 220 230 240
240 250 260 270
pF1KE3 VSHVFTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS
:::::::::::::::::::::::::::::::::::::::::::::::
NP_680 VSHVFTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS
250 260 270 280
>>NP_849142 (OMIM: 609099) F-box only protein 27 [Homo s (283 aa)
initn: 899 init1: 856 opt: 1157 Z-score: 1395.1 bits: 266.0 E(85289): 5.7e-71
Smith-Waterman score: 1157; 57.7% identity (79.0% similar) in 286 aa overlap (1-278:1-283)
10 20 30 40 50
pF1KE3 MGARLSR---RRLPA---DPSLALD--ALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDI
::: .:: :.:: .: ::: ::::::. ::::::::.:. ::: :::.:: .
NP_849 MGASVSRGRAARVPAPEPEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRAL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 VDGPTVWLLQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFN
::: ..::: ::::..: :::: .:. : .. .. : : :.:.: : :.::::: :
NP_849 VDGQALWLLILARDHGATGRALLHLARSC--QSPARNARP-CPLGRFCARRPIGRNLIRN
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 SCGEQGFRGWEVEHGGNGWAIEKNLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQE
::..:.: : :.:::.::..:.: : :::::::::::::: :: :.:..:: ::.: :
NP_849 PCGQEGLRKWMVQHGGDGWVVEENRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGLWPE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 LLDSAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQV
::::..:::::.::::::.. ::.:.: :.:::. . . :::: :::. ::.. .: .:
NP_849 LLDSGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNACLHV
180 190 200 210 220 230
240 250 260 270
pF1KE3 SHVFTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS
.:::.:. :.:.::::. :.:.. :.::::: ::.::: ::.:::
NP_849 THVFSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRVRLS
240 250 260 270 280
>>XP_016881779 (OMIM: 609099) PREDICTED: F-box only prot (249 aa)
initn: 911 init1: 602 opt: 957 Z-score: 1155.5 bits: 221.5 E(85289): 1.3e-57
Smith-Waterman score: 957; 57.4% identity (77.6% similar) in 237 aa overlap (1-229:1-234)
10 20 30 40 50
pF1KE3 MGARLSR---RRLPA---DPSLALD--ALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDI
::: .:: :.:: .: ::: ::::::. ::::::::.:. ::: :::.:: .
XP_016 MGASVSRGRAARVPAPEPEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRAL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 VDGPTVWLLQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFN
::: ..::: ::::..: :::: .:. : .. .. : : :.:.: : :.::::: :
XP_016 VDGQALWLLILARDHGATGRALLHLARSC--QSPARNARP-CPLGRFCARRPIGRNLIRN
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 SCGEQGFRGWEVEHGGNGWAIEKNLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQE
::..:.: : :.:::.::..:.: : :::::::::::::: :: :.:..:: ::.: :
XP_016 PCGQEGLRKWMVQHGGDGWVVEENRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGLWPE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 LLDSAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQV
::::..:::::.::::::.. ::.:.: :.:::. . . :::: :::. ::.. .:
XP_016 LLDSGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNACLHN
180 190 200 210 220 230
240 250 260 270
pF1KE3 SHVFTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS
XP_016 YSRELSPPPKEK
240
>>NP_036300 (OMIM: 607112) F-box only protein 2 [Homo sa (296 aa)
initn: 662 init1: 242 opt: 501 Z-score: 606.3 bits: 120.1 E(85289): 4.9e-27
Smith-Waterman score: 614; 39.2% identity (63.4% similar) in 268 aa overlap (18-273:47-294)
10 20 30 40
pF1KE3 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCR
:: :: ::..::. .: :: :: ::
NP_036 SPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQACRLVCL
20 30 40 50 60 70
50 60 70 80 90 100
pF1KE3 AWRDIVDGPTVWLLQLARDRSAEGRALYAVAQRCLPSNEDK-EEFPLCALARYCLRAPFG
:...::: .:::. . :: : . . ..:. ..: . . :
NP_036 RWKELVDGAPLWLLKCQQ----EG----LVPEGGVEEERDHWQQFYFLSKRR--------
80 90 100 110 120
110 120 130 140 150
pF1KE3 RNLIFNSCGEQGFRGW-EVEHGGNGWAIEKNLTPVPGAPS---------QTCFVTSFEWC
:::. : :::. ..:: .:::::.:: .:. .:: . . :..:::::
NP_036 RNLLRNPCGEEDLEGWCDVEHGGDGWRVEE----LPGDSGVEFTHDESVKKYFASSFEWC
130 140 150 160 170
160 170 180 190 200 210
pF1KE3 SKRQLVDLVMEGVWQELLDSAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSA
: :..:: :: :.::::..: : : ::...: . ::.:.: :.::. .:. ...::.
NP_036 RKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSS
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE3 SPDPVLQWTERGC-RQVSHVFTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRI
. : : .. : ..::.::..: :.:.: ::. :.: : : .:: ::.::: :
NP_036 GQVAVPQDSDGGGWMEISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
240 250 260 270 280 290
pF1KE3 RLS
>>XP_006710634 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 571 init1: 409 opt: 492 Z-score: 595.5 bits: 118.1 E(85289): 2e-26
Smith-Waterman score: 601; 36.3% identity (64.0% similar) in 267 aa overlap (17-278:12-262)
10 20 30 40 50 60
pF1KE3 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWL
... :: ..:.....::: :.:. :: :: :::..: :.:
XP_006 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWK
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFR
. : :: . . . : : . : : ::. . :::. : :.:. .
XP_006 RKCLR----EG---FITKDWDQPVA-DWKIF-------YFLRS-LHRNLLRNPCAEEDMF
60 70 80 90
130 140 150 160 170
pF1KE3 GWEVE-HGGNGWAIEK----NLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLD
.:... .::. : .:. . : : . ::::.: : : :::::: :: :.::::
XP_006 AWQIDFNGGDRWKVESLPGAHGTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLD
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 SAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQVSHV
. . .: : ::..:: .:::.:::.:.: .. ...: : . ::.. .::..
XP_006 TFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYT
160 170 180 190 200 210
240 250 260 270
pF1KE3 FTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS
:... .:.::. :.. :::.. :.: :: ::.::. : ...
XP_006 FSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQE
220 230 240 250 260 270
XP_006 EAAQSPYRAVVQIF
280 290
>>XP_016856496 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 571 init1: 409 opt: 492 Z-score: 595.5 bits: 118.1 E(85289): 2e-26
Smith-Waterman score: 601; 36.3% identity (64.0% similar) in 267 aa overlap (17-278:12-262)
10 20 30 40 50 60
pF1KE3 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWL
... :: ..:.....::: :.:. :: :: :::..: :.:
XP_016 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWK
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFR
. : :: . . . : : . : : ::. . :::. : :.:. .
XP_016 RKCLR----EG---FITKDWDQPVA-DWKIF-------YFLRS-LHRNLLRNPCAEEDMF
60 70 80 90
130 140 150 160 170
pF1KE3 GWEVE-HGGNGWAIEK----NLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLD
.:... .::. : .:. . : : . ::::.: : : :::::: :: :.::::
XP_016 AWQIDFNGGDRWKVESLPGAHGTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLD
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 SAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQVSHV
. . .: : ::..:: .:::.:::.:.: .. ...: : . ::.. .::..
XP_016 TFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYT
160 170 180 190 200 210
240 250 260 270
pF1KE3 FTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS
:... .:.::. :.. :::.. :.: :: ::.::. : ...
XP_016 FSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQE
220 230 240 250 260 270
XP_016 EAAQSPYRAVVQIF
280 290
>>XP_005263506 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 571 init1: 409 opt: 492 Z-score: 595.5 bits: 118.1 E(85289): 2e-26
Smith-Waterman score: 601; 36.3% identity (64.0% similar) in 267 aa overlap (17-278:12-262)
10 20 30 40 50 60
pF1KE3 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWL
... :: ..:.....::: :.:. :: :: :::..: :.:
XP_005 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWK
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFR
. : :: . . . : : . : : ::. . :::. : :.:. .
XP_005 RKCLR----EG---FITKDWDQPVA-DWKIF-------YFLRS-LHRNLLRNPCAEEDMF
60 70 80 90
130 140 150 160 170
pF1KE3 GWEVE-HGGNGWAIEK----NLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLD
.:... .::. : .:. . : : . ::::.: : : :::::: :: :.::::
XP_005 AWQIDFNGGDRWKVESLPGAHGTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLD
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 SAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQVSHV
. . .: : ::..:: .:::.:::.:.: .. ...: : . ::.. .::..
XP_005 TFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYT
160 170 180 190 200 210
240 250 260 270
pF1KE3 FTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS
:... .:.::. :.. :::.. :.: :: ::.::. : ...
XP_005 FSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQE
220 230 240 250 260 270
XP_005 EAAQSPYRAVVQIF
280 290
>>XP_005263505 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 571 init1: 409 opt: 492 Z-score: 595.5 bits: 118.1 E(85289): 2e-26
Smith-Waterman score: 601; 36.3% identity (64.0% similar) in 267 aa overlap (17-278:12-262)
10 20 30 40 50 60
pF1KE3 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWL
... :: ..:.....::: :.:. :: :: :::..: :.:
XP_005 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWK
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFR
. : :: . . . : : . : : ::. . :::. : :.:. .
XP_005 RKCLR----EG---FITKDWDQPVA-DWKIF-------YFLRS-LHRNLLRNPCAEEDMF
60 70 80 90
130 140 150 160 170
pF1KE3 GWEVE-HGGNGWAIEK----NLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLD
.:... .::. : .:. . : : . ::::.: : : :::::: :: :.::::
XP_005 AWQIDFNGGDRWKVESLPGAHGTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLD
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 SAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQVSHV
. . .: : ::..:: .:::.:::.:.: .. ...: : . ::.. .::..
XP_005 TFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYT
160 170 180 190 200 210
240 250 260 270
pF1KE3 FTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS
:... .:.::. :.. :::.. :.: :: ::.::. : ...
XP_005 FSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQE
220 230 240 250 260 270
XP_005 EAAQSPYRAVVQIF
280 290
>>NP_060908 (OMIM: 605647) F-box only protein 6 [Homo sa (293 aa)
initn: 571 init1: 409 opt: 492 Z-score: 595.5 bits: 118.1 E(85289): 2e-26
Smith-Waterman score: 601; 36.3% identity (64.0% similar) in 267 aa overlap (17-278:12-262)
10 20 30 40 50 60
pF1KE3 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWL
... :: ..:.....::: :.:. :: :: :::..: :.:
NP_060 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWK
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFR
. : :: . . . : : . : : ::. . :::. : :.:. .
NP_060 RKCLR----EG---FITKDWDQPVA-DWKIF-------YFLRS-LHRNLLRNPCAEEDMF
60 70 80 90
130 140 150 160 170
pF1KE3 GWEVE-HGGNGWAIEK----NLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLD
.:... .::. : .:. . : : . ::::.: : : :::::: :: :.::::
NP_060 AWQIDFNGGDRWKVESLPGAHGTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLD
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 SAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQVSHV
. . .: : ::..:: .:::.:::.:.: .. ...: : . ::.. .::..
NP_060 TFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYT
160 170 180 190 200 210
240 250 260 270
pF1KE3 FTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS
:... .:.::. :.. :::.. :.: :: ::.::. : ...
NP_060 FSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQE
220 230 240 250 260 270
NP_060 EAAQSPYRAVVQIF
280 290
278 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:58:50 2016 done: Sun Nov 6 08:58:51 2016
Total Scan time: 6.410 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]