FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3915, 115 aa
  1>>>pF1KE3915 115 - 115 aa - 115 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6049+/-0.000281; mu= 9.5514+/- 0.018
 mean_var=73.5277+/-14.818, 0's: 0 Z-trim(119.6): 3  B-trim: 1867 in 1/50
 Lambda= 0.149571
 statistics sampled from 33725 (33728) to 33725 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.395), width:  16
 Scan time:  5.000

The best scores are:                                      opt bits E(85289)
NP_004633 (OMIM: 602198) cyclin-dependent kinase 2 ( 115)  736 166.9 6.5e-42
NP_001257362 (OMIM: 602198) cyclin-dependent kinas (  87)  556 128.0 2.6e-30
NP_001257363 (OMIM: 602198) cyclin-dependent kinas (  87)  556 128.0 2.6e-30


>>NP_004633 (OMIM: 602198) cyclin-dependent kinase 2-ass  (115 aa)
 initn: 736 init1: 736 opt: 736  Z-score: 873.4  bits: 166.9 E(85289): 6.5e-42
Smith-Waterman score: 736; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KE3 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE3 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS
               70        80        90       100       110     

>>NP_001257362 (OMIM: 602198) cyclin-dependent kinase 2-  (87 aa)
 initn: 556 init1: 556 opt: 556  Z-score: 665.3  bits: 128.0 E(85289): 2.6e-30
Smith-Waterman score: 556; 100.0% identity (100.0% similar) in 87 aa overlap (29-115:1-87)

               10        20        30        40        50        60
pF1KE3 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ
                                   ::::::::::::::::::::::::::::::::
NP_001                             MATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ
                                           10        20        30  

               70        80        90       100       110     
pF1KE3 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS
             40        50        60        70        80       

>>NP_001257363 (OMIM: 602198) cyclin-dependent kinase 2-  (87 aa)
 initn: 556 init1: 556 opt: 556  Z-score: 665.3  bits: 128.0 E(85289): 2.6e-30
Smith-Waterman score: 556; 100.0% identity (100.0% similar) in 87 aa overlap (29-115:1-87)

               10        20        30        40        50        60
pF1KE3 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ
                                   ::::::::::::::::::::::::::::::::
NP_001                             MATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ
                                           10        20        30  

               70        80        90       100       110     
pF1KE3 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS
             40        50        60        70        80       




115 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:47:27 2016 done: Sun Nov  6 01:47:28 2016
 Total Scan time:  5.000 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]