FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3915, 115 aa
  1>>>pF1KE3915 115 - 115 aa - 115 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7041+/-0.000621; mu= 8.9216+/- 0.038
 mean_var=70.5224+/-13.937, 0's: 0 Z-trim(112.1): 7  B-trim: 62 in 1/50
 Lambda= 0.152725
 statistics sampled from 12882 (12885) to 12882 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.396), width:  16
 Scan time:  1.650

The best scores are:                                      opt bits E(32554)
CCDS9245.1 CDK2AP1 gene_id:8099|Hs108|chr12        ( 115)  736 170.1 2.7e-43
CCDS58289.1 CDK2AP1 gene_id:8099|Hs108|chr12       (  87)  556 130.4 1.8e-31
CCDS8169.1 CDK2AP2 gene_id:10263|Hs108|chr11       ( 126)  418 100.0 3.6e-22


>>CCDS9245.1 CDK2AP1 gene_id:8099|Hs108|chr12             (115 aa)
 initn: 736 init1: 736 opt: 736  Z-score: 890.8  bits: 170.1 E(32554): 2.7e-43
Smith-Waterman score: 736; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KE3 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE3 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS
               70        80        90       100       110     

>>CCDS58289.1 CDK2AP1 gene_id:8099|Hs108|chr12            (87 aa)
 initn: 556 init1: 556 opt: 556  Z-score: 678.3  bits: 130.4 E(32554): 1.8e-31
Smith-Waterman score: 556; 100.0% identity (100.0% similar) in 87 aa overlap (29-115:1-87)

               10        20        30        40        50        60
pF1KE3 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ
                                   ::::::::::::::::::::::::::::::::
CCDS58                             MATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ
                                           10        20        30  

               70        80        90       100       110     
pF1KE3 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS
             40        50        60        70        80       

>>CCDS8169.1 CDK2AP2 gene_id:10263|Hs108|chr11            (126 aa)
 initn: 407 init1: 314 opt: 418  Z-score: 511.5  bits: 100.0 E(32554): 3.6e-22
Smith-Waterman score: 422; 57.9% identity (78.6% similar) in 126 aa overlap (1-115:1-126)

                 10              20         30        40        50 
pF1KE3 MSYKPNLAA--HMPAAALNA------AGSVHSPSTSM-ATSSQYRQLLSDYGPPSLGYTQ
       :::::   :    :...  .      .::: ::: :. .... .: :..:.::::.::.:
CCDS81 MSYKPIAPAPSSTPGSSTPGPGTPVPTGSVPSPSGSVPGAGAPFRPLFNDFGPPSMGYVQ
               10        20        30        40        50        60

                60        70        80        90       100         
pF1KE3 GTG--NSQVPQSKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAET
       .    ..:  :: :..::..:::.::::::::::::::::::::::::::.:::::::::
CCDS81 AMKPPGAQGSQSTYTDLLSVIEEMGKEIRPTYAGSKSAMERLKRGIIHARALVRECLAET
               70        80        90       100       110       120

     110     
pF1KE3 ERNARS
       :::::.
CCDS81 ERNART
             




115 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:47:26 2016 done: Sun Nov  6 01:47:27 2016
 Total Scan time:  1.650 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]