Result of FASTA (omim) for
pFN21AE3914
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3914, 227 aa
1>>>pF1KE3914 227 - 227 aa - 227 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5819+/-0.000287; mu= 4.1960+/- 0.018
mean_var=133.1681+/-26.867, 0's: 0 Z-trim(122.5): 21 B-trim: 447 in 1/56
Lambda= 0.111141
statistics sampled from 40766 (40787) to 40766 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.478), width: 16
Scan time: 7.360
The best scores are: opt bits E(85289)
NP_068762 (OMIM: 607455) AN1-type zinc finger prot ( 227) 1584 264.3 1.2e-70
XP_016866660 (OMIM: 607455) PREDICTED: AN1-type zi ( 211) 1304 219.4 3.8e-57
XP_011513092 (OMIM: 607455) PREDICTED: AN1-type zi ( 171) 835 144.1 1.4e-34
XP_005249326 (OMIM: 607455) PREDICTED: AN1-type zi ( 205) 761 132.3 6e-31
NP_005998 (OMIM: 604761) AN1-type zinc finger prot ( 213) 257 51.5 1.3e-06
NP_001095890 (OMIM: 604761) AN1-type zinc finger p ( 213) 257 51.5 1.3e-06
NP_001265172 (OMIM: 604761) AN1-type zinc finger p ( 213) 257 51.5 1.3e-06
NP_001265174 (OMIM: 604761) AN1-type zinc finger p ( 213) 257 51.5 1.3e-06
NP_001265173 (OMIM: 604761) AN1-type zinc finger p ( 213) 257 51.5 1.3e-06
NP_001095891 (OMIM: 604761) AN1-type zinc finger p ( 213) 257 51.5 1.3e-06
NP_001229846 (OMIM: 610183) AN1-type zinc finger p ( 196) 209 43.8 0.00025
NP_001229842 (OMIM: 610183) AN1-type zinc finger p ( 208) 191 40.9 0.002
NP_001229841 (OMIM: 610183) AN1-type zinc finger p ( 208) 191 40.9 0.002
NP_001229845 (OMIM: 610183) AN1-type zinc finger p ( 208) 191 40.9 0.002
NP_061879 (OMIM: 610183) AN1-type zinc finger prot ( 208) 191 40.9 0.002
NP_001229844 (OMIM: 610183) AN1-type zinc finger p ( 208) 191 40.9 0.002
NP_001229843 (OMIM: 610183) AN1-type zinc finger p ( 208) 191 40.9 0.002
XP_011519986 (OMIM: 610183) PREDICTED: AN1-type zi ( 208) 191 40.9 0.002
NP_001229840 (OMIM: 610183) AN1-type zinc finger p ( 208) 191 40.9 0.002
NP_001229848 (OMIM: 610183) AN1-type zinc finger p ( 181) 186 40.1 0.0031
>>NP_068762 (OMIM: 607455) AN1-type zinc finger protein (227 aa)
initn: 1584 init1: 1584 opt: 1584 Z-score: 1389.1 bits: 264.3 E(85289): 1.2e-70
Smith-Waterman score: 1584; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227)
10 20 30 40 50 60
pF1KE3 MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 SEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 DSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVF
130 140 150 160 170 180
190 200 210 220
pF1KE3 CMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS
:::::::::::::::::::::::::::::::::::::::::::::::
NP_068 CMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS
190 200 210 220
>>XP_016866660 (OMIM: 607455) PREDICTED: AN1-type zinc f (211 aa)
initn: 1302 init1: 1302 opt: 1304 Z-score: 1147.0 bits: 219.4 E(85289): 3.8e-57
Smith-Waterman score: 1304; 94.1% identity (96.6% similar) in 204 aa overlap (25-227:8-211)
10 20 30 40 50
pF1KE3 MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFA-DFQKKQPDDDSAPSTSNSQSDL
: . . .:.. ::::::::::::::::::::::
XP_016 MEHLHPASPSELIMCGNTSPKDFQKKQPDDDSAPSTSNSQSDL
10 20 30 40
60 70 80 90 100 110
pF1KE3 FSEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCG
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 TDSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYV
110 120 130 140 150 160
180 190 200 210 220
pF1KE3 FCMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FCMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS
170 180 190 200 210
>>XP_011513092 (OMIM: 607455) PREDICTED: AN1-type zinc f (171 aa)
initn: 835 init1: 835 opt: 835 Z-score: 741.9 bits: 144.1 E(85289): 1.4e-34
Smith-Waterman score: 1087; 75.3% identity (75.3% similar) in 227 aa overlap (1-227:1-171)
10 20 30 40 50 60
pF1KE3 MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVF
::::
XP_011 --------------------------------------------------------GYVF
190 200 210 220
pF1KE3 CMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS
130 140 150 160 170
>>XP_005249326 (OMIM: 607455) PREDICTED: AN1-type zinc f (205 aa)
initn: 1401 init1: 741 opt: 761 Z-score: 676.6 bits: 132.3 E(85289): 6e-31
Smith-Waterman score: 1358; 89.9% identity (89.9% similar) in 227 aa overlap (1-227:1-205)
10 20 30 40 50 60
pF1KE3 MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCGT
::::::::::::::::::::::::::::::::::::::
XP_005 SEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEEY---------------------
70 80 90
130 140 150 160 170 180
pF1KE3 DSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 -SQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVF
100 110 120 130 140 150
190 200 210 220
pF1KE3 CMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS
:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS
160 170 180 190 200
>>NP_005998 (OMIM: 604761) AN1-type zinc finger protein (213 aa)
initn: 251 init1: 120 opt: 257 Z-score: 239.6 bits: 51.5 E(85289): 1.3e-06
Smith-Waterman score: 262; 28.5% identity (57.5% similar) in 228 aa overlap (7-222:4-213)
10 20 30 40 50
pF1KE3 MGDAGSERSKAPSLPPRCP--CGFWGSSKTMNLCSKCFAD-FQKKQPDDDSAP----STS
: ...:. : : :::.:. .: ..:: :. . .:..: . .: : :
NP_005 MAQETNQTPG-PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGS
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 NSQ-SDLFS-EETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLI
:: :: : ... .. :: .. . : ... .:. .. : .. . . . ..
NP_005 NSPTSDSASVQRADTSLNNCEGAAGSTSEKSRNVPV---AALPVTQQMTEMSISREDKIT
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 TP-TKRSCGTDSQSENEASP-VKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQ
:: :. : . .: :: :..: .. :.. : . : . :::.:. :. :.
NP_005 TPKTEVSEPVVTQ----PSPSVSQPSTSQSEEKAPELPKPK---KNRCFMCRKKVGLTGF
120 130 140 150 160
170 180 190 200 210 220
pF1KE3 ELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKV-GRSCQRIGEGCS
. :::: .:: ::: ..:.: .:. . :: :. : . : ... :::
NP_005 D---CRCGNLFCGLHRYSDKHNCPYDY----KAEAAAKIRKENPVVVAEKIQRI
170 180 190 200 210
>>NP_001095890 (OMIM: 604761) AN1-type zinc finger prote (213 aa)
initn: 251 init1: 120 opt: 257 Z-score: 239.6 bits: 51.5 E(85289): 1.3e-06
Smith-Waterman score: 262; 28.5% identity (57.5% similar) in 228 aa overlap (7-222:4-213)
10 20 30 40 50
pF1KE3 MGDAGSERSKAPSLPPRCP--CGFWGSSKTMNLCSKCFAD-FQKKQPDDDSAP----STS
: ...:. : : :::.:. .: ..:: :. . .:..: . .: : :
NP_001 MAQETNQTPG-PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGS
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 NSQ-SDLFS-EETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLI
:: :: : ... .. :: .. . : ... .:. .. : .. . . . ..
NP_001 NSPTSDSASVQRADTSLNNCEGAAGSTSEKSRNVPV---AALPVTQQMTEMSISREDKIT
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 TP-TKRSCGTDSQSENEASP-VKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQ
:: :. : . .: :: :..: .. :.. : . : . :::.:. :. :.
NP_001 TPKTEVSEPVVTQ----PSPSVSQPSTSQSEEKAPELPKPK---KNRCFMCRKKVGLTGF
120 130 140 150 160
170 180 190 200 210 220
pF1KE3 ELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKV-GRSCQRIGEGCS
. :::: .:: ::: ..:.: .:. . :: :. : . : ... :::
NP_001 D---CRCGNLFCGLHRYSDKHNCPYDY----KAEAAAKIRKENPVVVAEKIQRI
170 180 190 200 210
>>NP_001265172 (OMIM: 604761) AN1-type zinc finger prote (213 aa)
initn: 251 init1: 120 opt: 257 Z-score: 239.6 bits: 51.5 E(85289): 1.3e-06
Smith-Waterman score: 262; 28.5% identity (57.5% similar) in 228 aa overlap (7-222:4-213)
10 20 30 40 50
pF1KE3 MGDAGSERSKAPSLPPRCP--CGFWGSSKTMNLCSKCFAD-FQKKQPDDDSAP----STS
: ...:. : : :::.:. .: ..:: :. . .:..: . .: : :
NP_001 MAQETNQTPG-PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGS
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 NSQ-SDLFS-EETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLI
:: :: : ... .. :: .. . : ... .:. .. : .. . . . ..
NP_001 NSPTSDSASVQRADTSLNNCEGAAGSTSEKSRNVPV---AALPVTQQMTEMSISREDKIT
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 TP-TKRSCGTDSQSENEASP-VKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQ
:: :. : . .: :: :..: .. :.. : . : . :::.:. :. :.
NP_001 TPKTEVSEPVVTQ----PSPSVSQPSTSQSEEKAPELPKPK---KNRCFMCRKKVGLTGF
120 130 140 150 160
170 180 190 200 210 220
pF1KE3 ELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKV-GRSCQRIGEGCS
. :::: .:: ::: ..:.: .:. . :: :. : . : ... :::
NP_001 D---CRCGNLFCGLHRYSDKHNCPYDY----KAEAAAKIRKENPVVVAEKIQRI
170 180 190 200 210
>>NP_001265174 (OMIM: 604761) AN1-type zinc finger prote (213 aa)
initn: 251 init1: 120 opt: 257 Z-score: 239.6 bits: 51.5 E(85289): 1.3e-06
Smith-Waterman score: 262; 28.5% identity (57.5% similar) in 228 aa overlap (7-222:4-213)
10 20 30 40 50
pF1KE3 MGDAGSERSKAPSLPPRCP--CGFWGSSKTMNLCSKCFAD-FQKKQPDDDSAP----STS
: ...:. : : :::.:. .: ..:: :. . .:..: . .: : :
NP_001 MAQETNQTPG-PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGS
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 NSQ-SDLFS-EETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLI
:: :: : ... .. :: .. . : ... .:. .. : .. . . . ..
NP_001 NSPTSDSASVQRADTSLNNCEGAAGSTSEKSRNVPV---AALPVTQQMTEMSISREDKIT
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 TP-TKRSCGTDSQSENEASP-VKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQ
:: :. : . .: :: :..: .. :.. : . : . :::.:. :. :.
NP_001 TPKTEVSEPVVTQ----PSPSVSQPSTSQSEEKAPELPKPK---KNRCFMCRKKVGLTGF
120 130 140 150 160
170 180 190 200 210 220
pF1KE3 ELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKV-GRSCQRIGEGCS
. :::: .:: ::: ..:.: .:. . :: :. : . : ... :::
NP_001 D---CRCGNLFCGLHRYSDKHNCPYDY----KAEAAAKIRKENPVVVAEKIQRI
170 180 190 200 210
>>NP_001265173 (OMIM: 604761) AN1-type zinc finger prote (213 aa)
initn: 251 init1: 120 opt: 257 Z-score: 239.6 bits: 51.5 E(85289): 1.3e-06
Smith-Waterman score: 262; 28.5% identity (57.5% similar) in 228 aa overlap (7-222:4-213)
10 20 30 40 50
pF1KE3 MGDAGSERSKAPSLPPRCP--CGFWGSSKTMNLCSKCFAD-FQKKQPDDDSAP----STS
: ...:. : : :::.:. .: ..:: :. . .:..: . .: : :
NP_001 MAQETNQTPG-PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGS
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 NSQ-SDLFS-EETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLI
:: :: : ... .. :: .. . : ... .:. .. : .. . . . ..
NP_001 NSPTSDSASVQRADTSLNNCEGAAGSTSEKSRNVPV---AALPVTQQMTEMSISREDKIT
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 TP-TKRSCGTDSQSENEASP-VKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQ
:: :. : . .: :: :..: .. :.. : . : . :::.:. :. :.
NP_001 TPKTEVSEPVVTQ----PSPSVSQPSTSQSEEKAPELPKPK---KNRCFMCRKKVGLTGF
120 130 140 150 160
170 180 190 200 210 220
pF1KE3 ELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKV-GRSCQRIGEGCS
. :::: .:: ::: ..:.: .:. . :: :. : . : ... :::
NP_001 D---CRCGNLFCGLHRYSDKHNCPYDY----KAEAAAKIRKENPVVVAEKIQRI
170 180 190 200 210
>>NP_001095891 (OMIM: 604761) AN1-type zinc finger prote (213 aa)
initn: 251 init1: 120 opt: 257 Z-score: 239.6 bits: 51.5 E(85289): 1.3e-06
Smith-Waterman score: 262; 28.5% identity (57.5% similar) in 228 aa overlap (7-222:4-213)
10 20 30 40 50
pF1KE3 MGDAGSERSKAPSLPPRCP--CGFWGSSKTMNLCSKCFAD-FQKKQPDDDSAP----STS
: ...:. : : :::.:. .: ..:: :. . .:..: . .: : :
NP_001 MAQETNQTPG-PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGS
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 NSQ-SDLFS-EETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLI
:: :: : ... .. :: .. . : ... .:. .. : .. . . . ..
NP_001 NSPTSDSASVQRADTSLNNCEGAAGSTSEKSRNVPV---AALPVTQQMTEMSISREDKIT
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 TP-TKRSCGTDSQSENEASP-VKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQ
:: :. : . .: :: :..: .. :.. : . : . :::.:. :. :.
NP_001 TPKTEVSEPVVTQ----PSPSVSQPSTSQSEEKAPELPKPK---KNRCFMCRKKVGLTGF
120 130 140 150 160
170 180 190 200 210 220
pF1KE3 ELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKV-GRSCQRIGEGCS
. :::: .:: ::: ..:.: .:. . :: :. : . : ... :::
NP_001 D---CRCGNLFCGLHRYSDKHNCPYDY----KAEAAAKIRKENPVVVAEKIQRI
170 180 190 200 210
227 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:00:00 2016 done: Sun Nov 6 09:00:01 2016
Total Scan time: 7.360 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]