FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3914, 227 aa
  1>>>pF1KE3914 227 - 227 aa - 227 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0502+/-0.000695; mu= 7.1432+/- 0.042
 mean_var=117.3753+/-23.201, 0's: 0 Z-trim(114.7): 11  B-trim: 404 in 1/51
 Lambda= 0.118382
 statistics sampled from 15301 (15308) to 15301 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.47), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS4836.1 ZFAND3 gene_id:60685|Hs108|chr6         ( 227) 1584 280.4 6.8e-76


>>CCDS4836.1 ZFAND3 gene_id:60685|Hs108|chr6              (227 aa)
 initn: 1584 init1: 1584 opt: 1584  Z-score: 1476.1  bits: 280.4 E(32554): 6.8e-76
Smith-Waterman score: 1584; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KE3 MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 DSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVF
              130       140       150       160       170       180

              190       200       210       220       
pF1KE3 CMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 CMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS
              190       200       210       220       




227 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:59:59 2016 done: Sun Nov  6 09:00:00 2016
 Total Scan time:  2.380 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]