Result of FASTA (omim) for
pFN21AE3909
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3909, 296 aa
1>>>pF1KE3909 296 - 296 aa - 296 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4907+/-0.000393; mu= 15.5455+/- 0.025
mean_var=84.3968+/-17.104, 0's: 0 Z-trim(113.2): 375 B-trim: 510 in 1/53
Lambda= 0.139608
statistics sampled from 22038 (22474) to 22038 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.264), width: 16
Scan time: 4.450
The best scores are: opt bits E(85289)
NP_859053 (OMIM: 600164) GTP-binding protein GEM [ ( 296) 1978 408.1 1e-113
NP_005252 (OMIM: 600164) GTP-binding protein GEM [ ( 296) 1978 408.1 1e-113
XP_016868804 (OMIM: 600164) PREDICTED: GTP-binding ( 208) 1371 285.8 5e-77
NP_004156 (OMIM: 179503) GTP-binding protein RAD [ ( 308) 1073 225.9 7.8e-59
NP_001122322 (OMIM: 179503) GTP-binding protein RA ( 308) 1073 225.9 7.8e-59
XP_005260461 (OMIM: 610388) PREDICTED: GTP-binding ( 306) 884 187.8 2.2e-47
XP_016883322 (OMIM: 610388) PREDICTED: GTP-binding ( 306) 884 187.8 2.2e-47
NP_054731 (OMIM: 610388) GTP-binding protein REM 1 ( 298) 881 187.2 3.3e-47
XP_011527097 (OMIM: 610388) PREDICTED: GTP-binding ( 304) 879 186.8 4.5e-47
XP_005267440 (OMIM: 616955) PREDICTED: GTP-binding ( 341) 778 166.5 6.5e-41
XP_016876547 (OMIM: 616955) PREDICTED: GTP-binding ( 373) 778 166.5 7e-41
NP_775798 (OMIM: 616955) GTP-binding protein REM 2 ( 340) 768 164.5 2.6e-40
XP_016876548 (OMIM: 616955) PREDICTED: GTP-binding ( 372) 768 164.5 2.8e-40
XP_011534820 (OMIM: 616955) PREDICTED: GTP-binding ( 279) 491 108.6 1.4e-23
NP_001243750 (OMIM: 609591,615355) GTP-binding pro ( 236) 417 93.7 3.8e-19
NP_008843 (OMIM: 609591,615355) GTP-binding protei ( 219) 413 92.8 6.3e-19
NP_002921 (OMIM: 609592) GTP-binding protein Rit2 ( 217) 408 91.8 1.3e-18
XP_006715825 (OMIM: 179550) PREDICTED: ras-related ( 206) 387 87.6 2.3e-17
XP_011513768 (OMIM: 179550) PREDICTED: ras-related ( 206) 387 87.6 2.3e-17
NP_005393 (OMIM: 179550) ras-related protein Ral-A ( 206) 387 87.6 2.3e-17
XP_005263781 (OMIM: 179551) PREDICTED: ras-related ( 228) 373 84.8 1.7e-16
XP_016860111 (OMIM: 179551) PREDICTED: ras-related ( 206) 371 84.4 2.1e-16
XP_005263784 (OMIM: 179551) PREDICTED: ras-related ( 206) 371 84.4 2.1e-16
NP_002872 (OMIM: 179551) ras-related protein Ral-B ( 206) 371 84.4 2.1e-16
XP_005263786 (OMIM: 179551) PREDICTED: ras-related ( 206) 371 84.4 2.1e-16
XP_005263785 (OMIM: 179551) PREDICTED: ras-related ( 206) 371 84.4 2.1e-16
XP_016860110 (OMIM: 179551) PREDICTED: ras-related ( 228) 371 84.4 2.3e-16
XP_011509875 (OMIM: 179551) PREDICTED: ras-related ( 229) 371 84.4 2.3e-16
NP_001243749 (OMIM: 609591,615355) GTP-binding pro ( 183) 355 81.1 1.8e-15
XP_011518955 (OMIM: 109800,114480,137215,163200,19 ( 188) 355 81.1 1.8e-15
NP_004976 (OMIM: 109800,114480,137215,163200,19007 ( 188) 355 81.1 1.8e-15
NP_203524 (OMIM: 109800,114480,137215,163200,19007 ( 189) 354 80.9 2.1e-15
XP_006719132 (OMIM: 109800,114480,137215,163200,19 ( 189) 354 80.9 2.1e-15
XP_016874782 (OMIM: 109800,114480,137215,163200,19 ( 227) 354 81.0 2.4e-15
NP_036382 (OMIM: 600098) ras-related protein R-Ras ( 204) 350 80.1 3.9e-15
NP_066361 (OMIM: 179540) ras-related protein Rap-2 ( 183) 339 77.9 1.7e-14
NP_005334 (OMIM: 109800,137550,162900,163200,18847 ( 189) 339 77.9 1.7e-14
NP_001123914 (OMIM: 109800,137550,162900,163200,18 ( 189) 339 77.9 1.7e-14
NP_002515 (OMIM: 114500,137550,162900,163200,16479 ( 189) 338 77.7 2e-14
NP_002877 (OMIM: 179541) ras-related protein Rap-2 ( 183) 332 76.5 4.4e-14
NP_060064 (OMIM: 607863) GTP-binding protein Di-Ra ( 199) 331 76.3 5.5e-14
NP_006261 (OMIM: 165090) ras-related protein R-Ras ( 218) 331 76.3 5.9e-14
XP_016861376 (OMIM: 608435) PREDICTED: ras-related ( 208) 324 74.9 1.5e-13
NP_001239019 (OMIM: 608435) ras-related protein M- ( 208) 324 74.9 1.5e-13
XP_005247285 (OMIM: 608435) PREDICTED: ras-related ( 208) 324 74.9 1.5e-13
NP_001078518 (OMIM: 608435) ras-related protein M- ( 208) 324 74.9 1.5e-13
NP_036351 (OMIM: 608435) ras-related protein M-Ras ( 208) 324 74.9 1.5e-13
XP_016857451 (OMIM: 179520) PREDICTED: ras-related ( 184) 321 74.2 2.1e-13
XP_016857453 (OMIM: 179520) PREDICTED: ras-related ( 184) 321 74.2 2.1e-13
NP_001278825 (OMIM: 179520) ras-related protein Ra ( 184) 321 74.2 2.1e-13
>>NP_859053 (OMIM: 600164) GTP-binding protein GEM [Homo (296 aa)
initn: 1978 init1: 1978 opt: 1978 Z-score: 2162.6 bits: 408.1 E(85289): 1e-113
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296)
10 20 30 40 50 60
pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPEDHCRRSWSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPEDHCRRSWSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 DSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 LRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMAFKLKSKSCHDLSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 LRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMAFKLKSKSCHDLSVL
250 260 270 280 290
>>NP_005252 (OMIM: 600164) GTP-binding protein GEM [Homo (296 aa)
initn: 1978 init1: 1978 opt: 1978 Z-score: 2162.6 bits: 408.1 E(85289): 1e-113
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296)
10 20 30 40 50 60
pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPEDHCRRSWSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPEDHCRRSWSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 LRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMAFKLKSKSCHDLSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMAFKLKSKSCHDLSVL
250 260 270 280 290
>>XP_016868804 (OMIM: 600164) PREDICTED: GTP-binding pro (208 aa)
initn: 1371 init1: 1371 opt: 1371 Z-score: 1503.9 bits: 285.8 E(85289): 5e-77
Smith-Waterman score: 1371; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPEDHCRRSWSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPEDHCRRSWSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR
::::::::::::::::::::::::
XP_016 TEDIPIILVGNKSDLVRCREVSVSGTLQ
190 200
>>NP_004156 (OMIM: 179503) GTP-binding protein RAD [Homo (308 aa)
initn: 1007 init1: 814 opt: 1073 Z-score: 1177.2 bits: 225.9 E(85289): 7.8e-59
Smith-Waterman score: 1073; 57.9% identity (79.8% similar) in 292 aa overlap (9-296:23-308)
10 20 30 40
pF1KE3 MTLNNVTMRQGTV--GMQPQQQRWSIPADGRHLMVQKEPHQYSHRN
:.:.. : : .: :.:.: : :.. : .
NP_004 MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAALTPGALTAAA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 RHSATPEDHCRRSWSSDSTDSVIS--SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSM
..: : .: :: ::. : :.: .. :.:.:.: :::::.:: ::.::.:.
NP_004 AGTGTQGP--RLDWPEDSEDSLSSGGSDSDESVYKVLLLGAPGVGKSALARIFGGVEDGP
70 80 90 100 110
110 120 130 140 150 160
pF1KE3 DSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR
.. :. :. ::.:...:::: :.... :.::. : ..:: ::: .::::.::::.::.
NP_004 EA--EAAGH-TYDRSIVVDGEEASLMVYDIWEQDG-GRWLPGHCMAMGDAYVIVYSVTDK
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE3 ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA
.:::::::::.::::::::.:.::::::::::::: :::::.::::::::::::::::::
NP_004 GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE3 AVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMA
:..:::. ::::.:::.:::::::: : :: : .:.::. .::.:: :.:::.:...::
NP_004 ALHHNVQALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKRFLGRIVARNSRKMA
240 250 260 270 280 290
290
pF1KE3 FKLKSKSCHDLSVL
:. :::::::::::
NP_004 FRAKSKSCHDLSVL
300
>>NP_001122322 (OMIM: 179503) GTP-binding protein RAD [H (308 aa)
initn: 1007 init1: 814 opt: 1073 Z-score: 1177.2 bits: 225.9 E(85289): 7.8e-59
Smith-Waterman score: 1073; 57.9% identity (79.8% similar) in 292 aa overlap (9-296:23-308)
10 20 30 40
pF1KE3 MTLNNVTMRQGTV--GMQPQQQRWSIPADGRHLMVQKEPHQYSHRN
:.:.. : : .: :.:.: : :.. : .
NP_001 MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAALTPGALTAAA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 RHSATPEDHCRRSWSSDSTDSVIS--SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSM
..: : .: :: ::. : :.: .. :.:.:.: :::::.:: ::.::.:.
NP_001 AGTGTQGP--RLDWPEDSEDSLSSGGSDSDESVYKVLLLGAPGVGKSALARIFGGVEDGP
70 80 90 100 110
110 120 130 140 150 160
pF1KE3 DSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR
.. :. :. ::.:...:::: :.... :.::. : ..:: ::: .::::.::::.::.
NP_001 EA--EAAGH-TYDRSIVVDGEEASLMVYDIWEQDG-GRWLPGHCMAMGDAYVIVYSVTDK
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE3 ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA
.:::::::::.::::::::.:.::::::::::::: :::::.::::::::::::::::::
NP_001 GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE3 AVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMA
:..:::. ::::.:::.:::::::: : :: : .:.::. .::.:: :.:::.:...::
NP_001 ALHHNVQALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKRFLGRIVARNSRKMA
240 250 260 270 280 290
290
pF1KE3 FKLKSKSCHDLSVL
:. :::::::::::
NP_001 FRAKSKSCHDLSVL
300
>>XP_005260461 (OMIM: 610388) PREDICTED: GTP-binding pro (306 aa)
initn: 733 init1: 540 opt: 884 Z-score: 971.5 bits: 187.8 E(85289): 2.2e-47
Smith-Waterman score: 884; 49.5% identity (75.9% similar) in 291 aa overlap (14-296:27-306)
10 20 30 40
pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPA-DGRHLMVQKEPHQYSHRNRH
: :: . ..:. ...: . . ..
XP_005 MTLNTEQEAKTPLHRRASTPLPLSPRGHQPGRLS-TVPSTQSQHPRLGQSASLNPPTQKP
10 20 30 40 50
50 60 70 80 90 100
pF1KE3 SATPEDHCRRSWSSDSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAG-----VHDS
: .:.: :::.:.:: : :. :::::.:. ::::..::..::: .:..
XP_005 SPAPDD-----WSSESSDSEGSWEA---LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ
60 70 80 90 100 110
110 120 130 140 150
pF1KE3 M-DSDCEVLGEDTYERTLMVDGESATIILLDMWE-NKGENEWLHDHCMQVGDAYLIVYSI
. : ..::.::::: ::::..:....: :: .: .. : .. :.: :.::.:::::
XP_005 LGDPALPSVAEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSI
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE3 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIE
.::.:::.::::::::::..:.. .::::::::.::.::::::: :::::::::::::::
XP_005 ADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIE
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE3 TSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNK
:::..:::: :::::.:::.:::: ... .. .: :. ..:::: ....:.. .
XP_005 TSATLQHNVAELFEGVVRQLRLRR--RDSAAKEPPAPRRPASLAQRARRFLARLTARSAR
240 250 260 270 280
280 290
pF1KE3 NMAFKLKSKSCHDLSVL
:.: .:::::.:.::
XP_005 RRALKARSKSCHNLAVL
290 300
>>XP_016883322 (OMIM: 610388) PREDICTED: GTP-binding pro (306 aa)
initn: 733 init1: 540 opt: 884 Z-score: 971.5 bits: 187.8 E(85289): 2.2e-47
Smith-Waterman score: 884; 49.5% identity (75.9% similar) in 291 aa overlap (14-296:27-306)
10 20 30 40
pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPA-DGRHLMVQKEPHQYSHRNRH
: :: . ..:. ...: . . ..
XP_016 MTLNTEQEAKTPLHRRASTPLPLSPRGHQPGRLS-TVPSTQSQHPRLGQSASLNPPTQKP
10 20 30 40 50
50 60 70 80 90 100
pF1KE3 SATPEDHCRRSWSSDSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAG-----VHDS
: .:.: :::.:.:: : :. :::::.:. ::::..::..::: .:..
XP_016 SPAPDD-----WSSESSDSEGSWEA---LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ
60 70 80 90 100 110
110 120 130 140 150
pF1KE3 M-DSDCEVLGEDTYERTLMVDGESATIILLDMWE-NKGENEWLHDHCMQVGDAYLIVYSI
. : ..::.::::: ::::..:....: :: .: .. : .. :.: :.::.:::::
XP_016 LGDPALPSVAEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSI
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE3 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIE
.::.:::.::::::::::..:.. .::::::::.::.::::::: :::::::::::::::
XP_016 ADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIE
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE3 TSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNK
:::..:::: :::::.:::.:::: ... .. .: :. ..:::: ....:.. .
XP_016 TSATLQHNVAELFEGVVRQLRLRR--RDSAAKEPPAPRRPASLAQRARRFLARLTARSAR
240 250 260 270 280
280 290
pF1KE3 NMAFKLKSKSCHDLSVL
:.: .:::::.:.::
XP_016 RRALKARSKSCHNLAVL
290 300
>>NP_054731 (OMIM: 610388) GTP-binding protein REM 1 [Ho (298 aa)
initn: 748 init1: 540 opt: 881 Z-score: 968.4 bits: 187.2 E(85289): 3.3e-47
Smith-Waterman score: 894; 51.0% identity (76.9% similar) in 286 aa overlap (14-296:27-298)
10 20 30 40
pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPA-DGRHLMVQKEPHQYSHRNRH
: :: . ..:. ...: . . ..
NP_054 MTLNTEQEAKTPLHRRASTPLPLSPRGHQPGRLS-TVPSTQSQHPRLGQSASLNPPTQKP
10 20 30 40 50
50 60 70 80 90 100
pF1KE3 SATPEDHCRRSWSSDSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC
: .:.: :::.:.:: : :. :::::.:. ::::..::..::: ... :
NP_054 SPAPDD-----WSSESSDSEGSWEA---LYRVVLLGDPGVGKTSLASLFAG---KQERDL
60 70 80 90 100
110 120 130 140 150 160
pF1KE3 -EVLGEDTYERTLMVDGESATIILLDMWE-NKGENEWLHDHCMQVGDAYLIVYSITDRAS
: ::::.::::: ::::..:....: :: .: .. : .. :.: :.::.:::::.::.:
NP_054 HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGS
110 120 130 140 150 160
170 180 190 200 210 220
pF1KE3 FEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV
::.::::::::::..:.. .::::::::.::.::::::: ::::::::::::::::::..
NP_054 FESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATL
170 180 190 200 210 220
230 240 250 260 270 280
pF1KE3 QHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMAFK
:::: :::::.:::.:::: ... .. .: :. ..:::: ....:.. . :.:
NP_054 QHNVAELFEGVVRQLRLRR--RDSAAKEPPAPRRPASLAQRARRFLARLTARSARRRALK
230 240 250 260 270 280
290
pF1KE3 LKSKSCHDLSVL
.:::::.:.::
NP_054 ARSKSCHNLAVL
290
>>XP_011527097 (OMIM: 610388) PREDICTED: GTP-binding pro (304 aa)
initn: 733 init1: 540 opt: 879 Z-score: 966.1 bits: 186.8 E(85289): 4.5e-47
Smith-Waterman score: 879; 49.3% identity (76.2% similar) in 290 aa overlap (14-296:27-304)
10 20 30 40
pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPA-DGRHLMVQKEPHQYSHRNRH
: :: . ..:. ...: . . ..
XP_011 MTLNTEQEAKTPLHRRASTPLPLSPRGHQPGRLS-TVPSTQSQHPRLGQSASLNPPTQKP
10 20 30 40 50
50 60 70 80 90 100
pF1KE3 SATPEDHCRRSWSSDSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAG-----VHDS
: .:.: :::.:.:: : :. :::::.:. ::::..::..::: .:..
XP_011 SPAPDD-----WSSESSDSEGSWEA---LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE3 MDSDCEVLGEDTYERTLMVDGESATIILLDMWE-NKGENEWLHDHCMQVGDAYLIVYSIT
. . ..::.::::: ::::..:....: :: .: .. : .. :.: :.::.:::::.
XP_011 LGA-LPSVAEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIA
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE3 DRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIET
::.:::.::::::::::..:.. .::::::::.::.::::::: ::::::::::::::::
XP_011 DRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIET
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE3 SAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKN
::..:::: :::::.:::.:::: ... .. .: :. ..:::: ....:.. .
XP_011 SATLQHNVAELFEGVVRQLRLRR--RDSAAKEPPAPRRPASLAQRARRFLARLTARSARR
240 250 260 270 280
290
pF1KE3 MAFKLKSKSCHDLSVL
:.: .:::::.:.::
XP_011 RALKARSKSCHNLAVL
290 300
>>XP_005267440 (OMIM: 616955) PREDICTED: GTP-binding pro (341 aa)
initn: 751 init1: 636 opt: 778 Z-score: 855.5 bits: 166.5 E(85289): 6.5e-41
Smith-Waterman score: 778; 45.5% identity (71.7% similar) in 286 aa overlap (23-296:58-341)
10 20 30 40 50
pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPED
: :. :. . :.... : ... :
XP_005 PPGTPTPEADATLLKKSEKLLAELDRSGLPSAPGAPRRRGSMPVPYKHQLRRAQAVDELD
30 40 50 60 70 80
60 70 80 90 100
pF1KE3 HCRRSWSSDSTDSVISSESG----NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV
.. :: :.::. :.:.. . ..:.:.::.::::::::. :.:.. . . :
XP_005 WPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPEN
90 100 110 120 130 140
110 120 130 140 150 160
pF1KE3 LGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKA
.:::::: .::: : .:... :.::. . ::.:::.:.:::.:::.:.::: :: :.
XP_005 PAEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV
150 160 170 180 190 200
170 180 190 200 210 220
pF1KE3 SELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV
: ..:: .: .:.:.:::::::::.: ::::. ::: : ...:: ::::::..::.
XP_005 PETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT
210 220 230 240 250 260
230 240 250 260 270 280
pF1KE3 KELFEGIVRQVRLRRDSKEKNERRL--------AYQKRKESMPRKARRFWGKIVAKNNKN
.::::: :::.:::: .. . .: : :.::. .::.:: ...: .: :
XP_005 RELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPARRESLTKKAKRFLANLVPRNAK-
270 280 290 300 310 320
290
pF1KE3 MAFKLKSKSCHDLSVL
:: .:.::::::::
XP_005 -FFKQRSRSCHDLSVL
330 340
296 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:03:04 2016 done: Sun Nov 6 09:03:05 2016
Total Scan time: 4.450 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]