Result of FASTA (omim) for
pFN21AE3905
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3905, 445 aa
1>>>pF1KE3905 445 - 445 aa - 445 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6754+/-0.000453; mu= 21.0969+/- 0.028
mean_var=62.2532+/-12.473, 0's: 0 Z-trim(109.0): 36 B-trim: 6 in 1/52
Lambda= 0.162552
statistics sampled from 17159 (17175) to 17159 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.201), width: 16
Scan time: 7.660
The best scores are: opt bits E(85289)
NP_001485 (OMIM: 600767) rab GDP dissociation inhi ( 445) 2937 697.9 1.4e-200
XP_016871560 (OMIM: 600767) PREDICTED: rab GDP dis ( 423) 2797 665.0 1e-190
NP_001484 (OMIM: 300104,300849) rab GDP dissociati ( 447) 2642 628.7 9.4e-180
NP_001108628 (OMIM: 600767) rab GDP dissociation i ( 400) 2094 500.1 4.2e-141
NP_001812 (OMIM: 118825) rab proteins geranylgeran ( 656) 438 112.0 4.9e-24
XP_016884735 (OMIM: 300390,303100) PREDICTED: rab ( 505) 408 104.8 5.3e-22
XP_016884733 (OMIM: 300390,303100) PREDICTED: rab ( 505) 408 104.8 5.3e-22
XP_016884734 (OMIM: 300390,303100) PREDICTED: rab ( 505) 408 104.8 5.3e-22
NP_001307888 (OMIM: 300390,303100) rab proteins ge ( 505) 408 104.8 5.3e-22
XP_016884732 (OMIM: 300390,303100) PREDICTED: rab ( 505) 408 104.8 5.3e-22
XP_016884731 (OMIM: 300390,303100) PREDICTED: rab ( 602) 408 104.9 6.1e-22
NP_000381 (OMIM: 300390,303100) rab proteins geran ( 653) 408 104.9 6.5e-22
NP_001138886 (OMIM: 300390,303100) rab proteins ge ( 110) 153 44.5 0.00017
>>NP_001485 (OMIM: 600767) rab GDP dissociation inhibito (445 aa)
initn: 2937 init1: 2937 opt: 2937 Z-score: 3722.0 bits: 697.9 E(85289): 1.4e-200
Smith-Waterman score: 2937; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445)
10 20 30 40 50 60
pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI
370 380 390 400 410 420
430 440
pF1KE3 YKRMTGSEFDFEEMKRKKNDIYGED
:::::::::::::::::::::::::
NP_001 YKRMTGSEFDFEEMKRKKNDIYGED
430 440
>>XP_016871560 (OMIM: 600767) PREDICTED: rab GDP dissoci (423 aa)
initn: 2797 init1: 2797 opt: 2797 Z-score: 3544.9 bits: 665.0 E(85289): 1e-190
Smith-Waterman score: 2797; 100.0% identity (100.0% similar) in 423 aa overlap (23-445:1-423)
10 20 30 40 50 60
pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG
::::::::::::::::::::::::::::::::::::::
XP_016 MSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG
10 20 30
70 80 90 100 110 120
pF1KE3 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE3 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI
340 350 360 370 380 390
430 440
pF1KE3 YKRMTGSEFDFEEMKRKKNDIYGED
:::::::::::::::::::::::::
XP_016 YKRMTGSEFDFEEMKRKKNDIYGED
400 410 420
>>NP_001484 (OMIM: 300104,300849) rab GDP dissociation i (447 aa)
initn: 2642 init1: 2642 opt: 2642 Z-score: 3348.1 bits: 628.7 E(85289): 9.4e-180
Smith-Waterman score: 2642; 86.5% identity (96.8% similar) in 444 aa overlap (1-444:1-444)
10 20 30 40 50 60
pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG
:.:::::::::::::::::::::::::::::::::::::::::.::::::.:::::..
NP_001 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP
.:::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_001 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD
:::.:::::.:::.:::::::::::.::::::.::.::::.::. :.:::::.:::::::
NP_001 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
:::::::::::::::::::::: ::.::::::::::::::::::::::::::::::::::
NP_001 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
::::::::::::::...::..::::.:::::::.::::::::::::. :::.:.:::::.
NP_001 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK
::::::::::::::::::::::::::::::::::::::.:::::::::::::.::::::
NP_001 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI
.::::..:::::::::.::::.:::: : : : :::.: : .:::::::::::.:::.:
NP_001 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI
370 380 390 400 410 420
430 440
pF1KE3 YKRMTGSEFDFEEMKRKKNDIYGED
::::.:. ::::.::::.::..::
NP_001 YKRMAGTAFDFENMKRKQNDVFGEAEQ
430 440
>>NP_001108628 (OMIM: 600767) rab GDP dissociation inhib (400 aa)
initn: 2091 init1: 2091 opt: 2094 Z-score: 2654.2 bits: 500.1 E(85289): 4.2e-141
Smith-Waterman score: 2562; 89.9% identity (89.9% similar) in 445 aa overlap (1-445:1-400)
10 20 30 40 50 60
pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP
:::::::::::::::::::::::::
NP_001 SPPESMGRGRDWNVDLIPKFLMANG-----------------------------------
70 80
130 140 150 160 170 180
pF1KE3 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ----------LMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD
90 100 110 120 130
190 200 210 220 230 240
pF1KE3 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE3 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
200 210 220 230 240 250
310 320 330 340 350 360
pF1KE3 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK
260 270 280 290 300 310
370 380 390 400 410 420
pF1KE3 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI
320 330 340 350 360 370
430 440
pF1KE3 YKRMTGSEFDFEEMKRKKNDIYGED
:::::::::::::::::::::::::
NP_001 YKRMTGSEFDFEEMKRKKNDIYGED
380 390 400
>>NP_001812 (OMIM: 118825) rab proteins geranylgeranyltr (656 aa)
initn: 455 init1: 204 opt: 438 Z-score: 552.4 bits: 112.0 E(85289): 4.9e-24
Smith-Waterman score: 438; 24.3% identity (62.0% similar) in 334 aa overlap (69-392:226-549)
40 50 60 70 80 90
pF1KE3 YGGESASITPLEDLYKRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR
:: .:.::. :.:...: :. .:. ..:.:
NP_001 GDKDESKSTVEDKADEPIRNRITYSQIVKEGRRFNIDLVSKLLYSQGLLIDLLIKSDVSR
200 210 220 230 240 250
100 110 120 130 140 150
pF1KE3 YLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTF
:..:: . .... ::. .:: ..:... :. . . ::: . :::.. .. :. : .
NP_001 YVEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLEY-EQHPDEY
260 270 280 290 300 310
160 170 180 190 200 210
pF1KE3 EGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPC--YETINRIKLYSESL
... .. .. . : : .. :. :..:. .. : . .: : . . :
NP_001 QAF--RQCSFSEYLKTKKLTPNLQHFVLHSIAMTS-----ESSCTTIDGLNATKNFLQCL
320 330 340 350 360
220 230 240 250 260 270
pF1KE3 ARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVKSE-GE
.:.:..:.:.:::: ::.:::: :. :..:: : : . .. ..: ..:. .. .. :.
NP_001 GRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGIYCLRHKVQCFVVDKESGRCKAIIDHFGQ
370 380 390 400 410 420
280 290 300 310 320
pF1KE3 IARCKQLICDPSYVKDRVE---KVGQVIRVICILSHPIKNTN-DANSCQIIIPQNQVNRK
: .: . ::..... . :. :.. : .. : .:. : .. .:.: . .
NP_001 RINAKYFIVEDSYLSEETCSNVQYKQISRAVLITDQSILKTDLDQQTSILIVPPAEPG-A
430 440 450 460 470 480
330 340 350 360 370 380
pF1KE3 SDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALE-LLEPIEQKFVSISDLLV
. : . . . . :.. .. . .: ..... ... :. : . .. .:
NP_001 CAVRVTELCSSTMTCMKDTYLVHLTCS-SSKTAREDLESVVKKLFTPYTETEINEEELTK
490 500 510 520 530 540
390 400 410 420 430 440
pF1KE3 PKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTGSEFDFEEMKRKKNDIYGED
:. :
NP_001 PRLLWALYFNMRDSSGISRSSYNGLPSNVYVCSGPDCGLGNEHAVKQAETLFQEIFPTEE
550 560 570 580 590 600
>>XP_016884735 (OMIM: 300390,303100) PREDICTED: rab prot (505 aa)
initn: 416 init1: 195 opt: 408 Z-score: 516.0 bits: 104.8 E(85289): 5.3e-22
Smith-Waterman score: 408; 24.6% identity (58.9% similar) in 418 aa overlap (25-421:26-425)
10 20 30 40 50
pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRN---PYYGGESAS-ITPL-EDLY-
:.:.: : : . : ..:. : .:. ::
XP_016 MSCEMLTEQTPSSDPENALEVNGAEVTGEKENHCDDKTCVPSTSAEDMSENVPIAEDTTE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 --KRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVY
:. .: : . . .:: .:.::. :.:.. : :. .:. ..:.:: .:: ...
XP_016 QPKKNRITYS--QIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 KGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDV
. :.. .:: ..:... :. . . ::: . :::.. .. :: : ..: . . :. .
XP_016 REGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 YKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGL
: : .. .. :..:. :.. . . .. : . . :.:::..:.:.::::
XP_016 LKTQKLTPNLQYIVMHSIAM--TSE-TASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQ
180 190 200 210 220 230
240 250 260 270 280
pF1KE3 GELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVK
::::: : :. :..:: : : . .. ..: .. : .. .. :. .... . ::
XP_016 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFP
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE3 D----RVEKVGQVIRVICILSHPIKNTNDANSCQII-IPQNQVNRKSDIYVCMISFAHNV
. ::. :. :.. : .. . .:.. .. .:. .: .. . . . : . . .
XP_016 ENMCSRVQ-YRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA-VRVIELCSSTMT
300 310 320 330 340 350
350 360 370 380 390 400
pF1KE3 AAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQK-FVSISDLLVPKDLGTESQIFISR
.: :.. .. : . : : :: . :: :: ... . .. . .:. .
XP_016 CMKGTYLVHLTCTSS--------KTAREDLESVVQKLFVPYTEMEIENEQVEKPRILWAL
360 370 380 390 400
410 420 430 440
pF1KE3 TYDA--TTHFETTC-DDI-KNIYKRMTGSEFDFEEMKRKKNDIYGED
.. .. . .: .:. .:.:
XP_016 YFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQEICPNEDFCPPPPN
410 420 430 440 450 460
>>XP_016884733 (OMIM: 300390,303100) PREDICTED: rab prot (505 aa)
initn: 416 init1: 195 opt: 408 Z-score: 516.0 bits: 104.8 E(85289): 5.3e-22
Smith-Waterman score: 408; 24.6% identity (58.9% similar) in 418 aa overlap (25-421:26-425)
10 20 30 40 50
pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRN---PYYGGESAS-ITPL-EDLY-
:.:.: : : . : ..:. : .:. ::
XP_016 MSCEMLTEQTPSSDPENALEVNGAEVTGEKENHCDDKTCVPSTSAEDMSENVPIAEDTTE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 --KRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVY
:. .: : . . .:: .:.::. :.:.. : :. .:. ..:.:: .:: ...
XP_016 QPKKNRITYS--QIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 KGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDV
. :.. .:: ..:... :. . . ::: . :::.. .. :: : ..: . . :. .
XP_016 REGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 YKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGL
: : .. .. :..:. :.. . . .. : . . :.:::..:.:.::::
XP_016 LKTQKLTPNLQYIVMHSIAM--TSE-TASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQ
180 190 200 210 220 230
240 250 260 270 280
pF1KE3 GELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVK
::::: : :. :..:: : : . .. ..: .. : .. .. :. .... . ::
XP_016 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFP
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE3 D----RVEKVGQVIRVICILSHPIKNTNDANSCQII-IPQNQVNRKSDIYVCMISFAHNV
. ::. :. :.. : .. . .:.. .. .:. .: .. . . . : . . .
XP_016 ENMCSRVQ-YRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA-VRVIELCSSTMT
300 310 320 330 340 350
350 360 370 380 390 400
pF1KE3 AAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQK-FVSISDLLVPKDLGTESQIFISR
.: :.. .. : . : : :: . :: :: ... . .. . .:. .
XP_016 CMKGTYLVHLTCTSS--------KTAREDLESVVQKLFVPYTEMEIENEQVEKPRILWAL
360 370 380 390 400
410 420 430 440
pF1KE3 TYDA--TTHFETTC-DDI-KNIYKRMTGSEFDFEEMKRKKNDIYGED
.. .. . .: .:. .:.:
XP_016 YFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQEICPNEDFCPPPPN
410 420 430 440 450 460
>>XP_016884734 (OMIM: 300390,303100) PREDICTED: rab prot (505 aa)
initn: 416 init1: 195 opt: 408 Z-score: 516.0 bits: 104.8 E(85289): 5.3e-22
Smith-Waterman score: 408; 24.6% identity (58.9% similar) in 418 aa overlap (25-421:26-425)
10 20 30 40 50
pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRN---PYYGGESAS-ITPL-EDLY-
:.:.: : : . : ..:. : .:. ::
XP_016 MSCEMLTEQTPSSDPENALEVNGAEVTGEKENHCDDKTCVPSTSAEDMSENVPIAEDTTE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 --KRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVY
:. .: : . . .:: .:.::. :.:.. : :. .:. ..:.:: .:: ...
XP_016 QPKKNRITYS--QIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 KGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDV
. :.. .:: ..:... :. . . ::: . :::.. .. :: : ..: . . :. .
XP_016 REGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 YKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGL
: : .. .. :..:. :.. . . .. : . . :.:::..:.:.::::
XP_016 LKTQKLTPNLQYIVMHSIAM--TSE-TASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQ
180 190 200 210 220 230
240 250 260 270 280
pF1KE3 GELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVK
::::: : :. :..:: : : . .. ..: .. : .. .. :. .... . ::
XP_016 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFP
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE3 D----RVEKVGQVIRVICILSHPIKNTNDANSCQII-IPQNQVNRKSDIYVCMISFAHNV
. ::. :. :.. : .. . .:.. .. .:. .: .. . . . : . . .
XP_016 ENMCSRVQ-YRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA-VRVIELCSSTMT
300 310 320 330 340 350
350 360 370 380 390 400
pF1KE3 AAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQK-FVSISDLLVPKDLGTESQIFISR
.: :.. .. : . : : :: . :: :: ... . .. . .:. .
XP_016 CMKGTYLVHLTCTSS--------KTAREDLESVVQKLFVPYTEMEIENEQVEKPRILWAL
360 370 380 390 400
410 420 430 440
pF1KE3 TYDA--TTHFETTC-DDI-KNIYKRMTGSEFDFEEMKRKKNDIYGED
.. .. . .: .:. .:.:
XP_016 YFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQEICPNEDFCPPPPN
410 420 430 440 450 460
>>NP_001307888 (OMIM: 300390,303100) rab proteins gerany (505 aa)
initn: 416 init1: 195 opt: 408 Z-score: 516.0 bits: 104.8 E(85289): 5.3e-22
Smith-Waterman score: 408; 24.6% identity (58.9% similar) in 418 aa overlap (25-421:26-425)
10 20 30 40 50
pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRN---PYYGGESAS-ITPL-EDLY-
:.:.: : : . : ..:. : .:. ::
NP_001 MSCEMLTEQTPSSDPENALEVNGAEVTGEKENHCDDKTCVPSTSAEDMSENVPIAEDTTE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 --KRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVY
:. .: : . . .:: .:.::. :.:.. : :. .:. ..:.:: .:: ...
NP_001 QPKKNRITYS--QIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 KGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDV
. :.. .:: ..:... :. . . ::: . :::.. .. :: : ..: . . :. .
NP_001 REGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 YKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGL
: : .. .. :..:. :.. . . .. : . . :.:::..:.:.::::
NP_001 LKTQKLTPNLQYIVMHSIAM--TSE-TASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQ
180 190 200 210 220 230
240 250 260 270 280
pF1KE3 GELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVK
::::: : :. :..:: : : . .. ..: .. : .. .. :. .... . ::
NP_001 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFP
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE3 D----RVEKVGQVIRVICILSHPIKNTNDANSCQII-IPQNQVNRKSDIYVCMISFAHNV
. ::. :. :.. : .. . .:.. .. .:. .: .. . . . : . . .
NP_001 ENMCSRVQ-YRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA-VRVIELCSSTMT
300 310 320 330 340 350
350 360 370 380 390 400
pF1KE3 AAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQK-FVSISDLLVPKDLGTESQIFISR
.: :.. .. : . : : :: . :: :: ... . .. . .:. .
NP_001 CMKGTYLVHLTCTSS--------KTAREDLESVVQKLFVPYTEMEIENEQVEKPRILWAL
360 370 380 390 400
410 420 430 440
pF1KE3 TYDA--TTHFETTC-DDI-KNIYKRMTGSEFDFEEMKRKKNDIYGED
.. .. . .: .:. .:.:
NP_001 YFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQEICPNEDFCPPPPN
410 420 430 440 450 460
>>XP_016884732 (OMIM: 300390,303100) PREDICTED: rab prot (505 aa)
initn: 416 init1: 195 opt: 408 Z-score: 516.0 bits: 104.8 E(85289): 5.3e-22
Smith-Waterman score: 408; 24.6% identity (58.9% similar) in 418 aa overlap (25-421:26-425)
10 20 30 40 50
pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRN---PYYGGESAS-ITPL-EDLY-
:.:.: : : . : ..:. : .:. ::
XP_016 MSCEMLTEQTPSSDPENALEVNGAEVTGEKENHCDDKTCVPSTSAEDMSENVPIAEDTTE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 --KRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVY
:. .: : . . .:: .:.::. :.:.. : :. .:. ..:.:: .:: ...
XP_016 QPKKNRITYS--QIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 KGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDV
. :.. .:: ..:... :. . . ::: . :::.. .. :: : ..: . . :. .
XP_016 REGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 YKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGL
: : .. .. :..:. :.. . . .. : . . :.:::..:.:.::::
XP_016 LKTQKLTPNLQYIVMHSIAM--TSE-TASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQ
180 190 200 210 220 230
240 250 260 270 280
pF1KE3 GELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVK
::::: : :. :..:: : : . .. ..: .. : .. .. :. .... . ::
XP_016 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFP
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE3 D----RVEKVGQVIRVICILSHPIKNTNDANSCQII-IPQNQVNRKSDIYVCMISFAHNV
. ::. :. :.. : .. . .:.. .. .:. .: .. . . . : . . .
XP_016 ENMCSRVQ-YRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA-VRVIELCSSTMT
300 310 320 330 340 350
350 360 370 380 390 400
pF1KE3 AAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQK-FVSISDLLVPKDLGTESQIFISR
.: :.. .. : . : : :: . :: :: ... . .. . .:. .
XP_016 CMKGTYLVHLTCTSS--------KTAREDLESVVQKLFVPYTEMEIENEQVEKPRILWAL
360 370 380 390 400
410 420 430 440
pF1KE3 TYDA--TTHFETTC-DDI-KNIYKRMTGSEFDFEEMKRKKNDIYGED
.. .. . .: .:. .:.:
XP_016 YFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQEICPNEDFCPPPPN
410 420 430 440 450 460
445 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:05:30 2016 done: Sun Nov 6 09:05:32 2016
Total Scan time: 7.660 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]