Result of FASTA (ccds) for
pFN21AE3902
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3902, 181 aa
1>>>pF1KE3902 181 - 181 aa - 181 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0763+/-0.000998; mu= 14.0670+/- 0.061
mean_var=71.3515+/-15.766, 0's: 0 Z-trim(104.0): 149 B-trim: 537 in 2/48
Lambda= 0.151835
statistics sampled from 7530 (7706) to 7530 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.237), width: 16
Scan time: 1.580
The best scores are: opt bits E(32554)
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 1169 265.1 1.7e-71
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 870 199.5 6.9e-52
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 723 167.4 4.2e-42
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 719 166.5 7.8e-42
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 711 164.8 2.6e-41
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 699 162.2 1.6e-40
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 668 155.4 1.8e-38
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 582 136.5 8.4e-33
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 577 135.4 1.8e-32
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 561 132.3 5e-31
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 524 123.8 5.7e-29
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 514 122.0 6.2e-28
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 504 119.8 2.7e-27
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 498 118.1 3e-27
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2 ( 142) 466 111.0 3.1e-25
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 456 109.0 1.8e-24
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 447 107.0 6.7e-24
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 427 102.6 1.5e-22
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 424 101.9 2.3e-22
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 424 102.0 2.4e-22
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 416 100.2 7.6e-22
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 412 99.3 1.5e-21
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 399 96.5 1e-20
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 389 94.3 4.6e-20
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 376 91.4 3.5e-19
CCDS74087.1 ARL17A gene_id:51326|Hs108|chr17 ( 141) 359 87.6 3.5e-18
CCDS55770.1 ARL2 gene_id:402|Hs108|chr11 ( 157) 353 86.3 9.5e-18
CCDS82144.1 ARL17B gene_id:100506084|Hs108|chr17 ( 95) 349 85.3 1.2e-17
CCDS82146.1 ARL17A gene_id:51326|Hs108|chr17 ( 95) 349 85.3 1.2e-17
CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17 ( 88) 345 84.4 2.1e-17
CCDS54137.1 ARL17B gene_id:100506084|Hs108|chr17 ( 125) 345 84.5 2.7e-17
CCDS45717.1 ARL17A gene_id:51326|Hs108|chr17 ( 125) 345 84.5 2.7e-17
CCDS45718.1 ARL17A gene_id:51326|Hs108|chr17 ( 177) 345 84.6 3.5e-17
CCDS58557.1 ARL17B gene_id:100506084|Hs108|chr17 ( 177) 345 84.6 3.5e-17
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 324 80.1 9.4e-16
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 313 77.7 5.8e-15
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 290 72.6 1.5e-13
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 284 71.5 7.3e-13
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 ( 147) 272 68.6 2e-12
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 267 67.6 5.5e-12
CCDS45813.1 ARL16 gene_id:339231|Hs108|chr17 ( 197) 266 67.3 6.2e-12
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 266 67.3 6.2e-12
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 266 67.3 6.2e-12
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 154) 256 65.1 2.3e-11
>>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 (181 aa)
initn: 1169 init1: 1169 opt: 1169 Z-score: 1397.3 bits: 265.1 E(32554): 1.7e-71
Smith-Waterman score: 1169; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KE3 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
130 140 150 160 170 180
pF1KE3 Q
:
CCDS44 Q
>>CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 (135 aa)
initn: 870 init1: 870 opt: 870 Z-score: 1045.1 bits: 199.5 E(32554): 6.9e-52
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 133 aa overlap (49-181:3-135)
20 30 40 50 60 70
pF1KE3 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW
::::::::::::::::::::::::::::::
CCDS73 MAIGFNVETVTYKNLKFQVWDLGGQTSIRPYW
10 20 30
80 90 100 110 120 130
pF1KE3 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSE
40 50 60 70 80 90
140 150 160 170 180
pF1KE3 MANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ
:::::::::::::::::::::::::::::::::::::::::::
CCDS73 MANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ
100 110 120 130
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 738 init1: 723 opt: 723 Z-score: 869.3 bits: 167.4 E(32554): 4.2e-42
Smith-Waterman score: 723; 56.9% identity (87.3% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KE3 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
::..:...:..::: .:::::..:::.::::::::.:..::.:::::::::::::: :::
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
..: :::.::: .::: :: :..::...:.:::: ::.:.. .. ::. :: :.::: :.
CCDS15 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
:.:::::::. .::...:....::: .:. :.: : : ::.: :: :...:: . :...
CCDS15 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
130 140 150 160 170 180
pF1KE3 Q
.
CCDS15 K
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 719 init1: 719 opt: 719 Z-score: 864.5 bits: 166.5 E(32554): 7.8e-42
Smith-Waterman score: 719; 56.9% identity (87.8% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KE3 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
::..:.....::.: .:::::..:::.::::::::.:..::.:::::::::::::: :::
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
..: :::.::: .::: :: :..::...:.:::: ::.:.. .. ::. :: :.::: :.
CCDS87 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
:.:::::::. .::...:....::: .:. :.: : : ::.: :: :...::.. ::..
CCDS87 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
130 140 150 160 170 180
pF1KE3 Q
.
CCDS87 K
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 727 init1: 711 opt: 711 Z-score: 855.1 bits: 164.8 E(32554): 2.6e-41
Smith-Waterman score: 711; 58.3% identity (82.8% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KE3 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
:: :..:: .:: ..::::..:::.::::::::.:..::.:::::::::::::: :::
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
. : :::.::: .::: :: :..::...:.:::: ::.:. : .:: ::.:.::: :.
CCDS34 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
:.:::::::: .:: ::....::: :..: : . : ::.:::: ....:: . :..:
CCDS34 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
130 140 150 160 170 180
pF1KE3 Q
>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa)
initn: 699 init1: 699 opt: 699 Z-score: 840.9 bits: 162.2 E(32554): 1.6e-40
Smith-Waterman score: 699; 58.3% identity (82.2% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KE3 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
:: .::.:: ::: ..::::..:::.::::::::.:..::.:::::::::::::: :::
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
. : :::.::: ::: :. :..::...:.:::: ::.:: .:: :: .::: :.
CCDS28 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
:..::::::. .::. :::...::: .:..: : . : ::.:::: :...:: . :..:
CCDS28 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
130 140 150 160 170 180
pF1KE3 Q
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 668 init1: 668 opt: 668 Z-score: 804.4 bits: 155.4 E(32554): 1.8e-38
Smith-Waterman score: 668; 55.2% identity (84.3% similar) in 172 aa overlap (8-179:4-175)
10 20 30 40 50 60
pF1KE3 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
..:..::..:::::.::::.::::::::.:..:. ::::::.:::::::::::
CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
.::.:::.::: .::: :: ::..:...:.::: ::::: ...:: .....:.: ::
CCDS96 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
...::::::. .:: :. ..::: ..::.: . . ::.: :: :.. ::. . ::
CCDS96 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
120 130 140 150 160 170
pF1KE3 Q
>>CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 (179 aa)
initn: 586 init1: 568 opt: 582 Z-score: 702.4 bits: 136.5 E(32554): 8.4e-33
Smith-Waterman score: 582; 48.9% identity (76.7% similar) in 180 aa overlap (1-180:1-179)
10 20 30 40 50 60
pF1KE3 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
:: .:. :. ::. .: ...:.:::.::::::::.....::: : :::: ::: .. .:
CCDS21 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
.: .::.::: :.: : ::.::. :: :::: ::.::.... :: :: .:.::::
CCDS21 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
:..::::::... :: .:... : : ..::..:.: : : :: ...::.. :: :
CCDS21 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR
120 130 140 150 160 170
pF1KE3 Q
>>CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 (179 aa)
initn: 566 init1: 566 opt: 577 Z-score: 696.5 bits: 135.4 E(32554): 1.8e-32
Smith-Waterman score: 577; 48.9% identity (76.7% similar) in 180 aa overlap (1-180:1-179)
10 20 30 40 50 60
pF1KE3 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
:: .:....: :: ..: ...:.:::.::::::::.. ..::: : :::: ::: .. ::
CCDS71 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
.: .::.::: :.: : :::::. .: :::: ::.:..:.: :: :: .:.::::
CCDS71 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
...:::::::. ::..:... : : ..::. :.: . : : :: ...::.. . :
CCDS71 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
120 130 140 150 160 170
pF1KE3 Q
>>CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 (574 aa)
initn: 514 init1: 485 opt: 561 Z-score: 670.5 bits: 132.3 E(32554): 5e-31
Smith-Waterman score: 561; 53.1% identity (77.2% similar) in 162 aa overlap (17-177:404-565)
10 20 30 40
pF1KE3 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTI
:.:.. ::::::::::::..:. : . :
CCDS39 FTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPI
380 390 400 410 420 430
50 60 70 80 90 100
pF1KE3 PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSE
:::::::::: :::::: .::.::. ..:: :. :: ::.::..:::: ::::. ..::
CCDS39 PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSE
440 450 460 470 480 490
110 120 130 140 150 160
pF1KE3 LVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALK-DRKWQIFKTSATKGTG
:. .: :.::: :.:..::::::. :.. :... :.: : :.: : .: .: :
CCDS39 LAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMG
500 510 520 530 540 550
170 180
pF1KE3 LDEAMEWLVETLKSRQ
: :...:: . :
CCDS39 LYEGLDWLSRQLVAAGVLDVA
560 570
181 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:06:43 2016 done: Sun Nov 6 09:06:43 2016
Total Scan time: 1.580 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]