Result of FASTA (ccds) for
pFN21AE3888
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3888, 304 aa
1>>>pF1KE3888 304 - 304 aa - 304 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6604+/-0.000645; mu= 14.4844+/- 0.039
mean_var=76.1269+/-14.883, 0's: 0 Z-trim(111.3): 12 B-trim: 0 in 0/53
Lambda= 0.146996
statistics sampled from 12427 (12436) to 12427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.372), width: 16
Scan time: 1.240
The best scores are: opt bits E(33420)
CCDS10592.1 DCUN1D3 gene_id:123879|Hs109|chr16 ( 304) 2093 452.7 1.7e-127
CCDS32013.1 DCUN1D2 gene_id:55208|Hs109|chr13 ( 259) 585 132.8 2.7e-31
CCDS77862.1 DCUN1D1 gene_id:54165|Hs109|chr3 ( 244) 564 128.4 5.6e-30
CCDS3240.1 DCUN1D1 gene_id:54165|Hs109|chr3 ( 259) 564 128.4 5.9e-30
CCDS8325.1 DCUN1D5 gene_id:84259|Hs109|chr11 ( 237) 397 93.0 2.5e-19
CCDS33982.1 DCUN1D4 gene_id:23142|Hs109|chr4 ( 292) 396 92.8 3.5e-19
CCDS75123.1 DCUN1D4 gene_id:23142|Hs109|chr4 ( 336) 396 92.8 3.9e-19
>>CCDS10592.1 DCUN1D3 gene_id:123879|Hs109|chr16 (304 aa)
initn: 2093 init1: 2093 opt: 2093 Z-score: 2402.9 bits: 452.7 E(33420): 1.7e-127
Smith-Waterman score: 2093; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)
10 20 30 40 50 60
pF1KE3 MGQCVTKCKNPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGQCVTKCKNPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 AATEACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AATEACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNPPVLDQWLNFLTENPSGIKGISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNPPVLDQWLNFLTENPSGIKGISR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 DTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKREGEGRGALSSGPEGLCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKREGEGRGALSSGPEGLCP
250 260 270 280 290 300
pF1KE3 EEQT
::::
CCDS10 EEQT
>>CCDS32013.1 DCUN1D2 gene_id:55208|Hs109|chr13 (259 aa)
initn: 550 init1: 280 opt: 585 Z-score: 675.5 bits: 132.8 E(33420): 2.7e-31
Smith-Waterman score: 585; 44.5% identity (71.6% similar) in 218 aa overlap (60-276:39-246)
30 40 50 60 70 80
pF1KE3 SRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLPTSSGDAGRESKSNAEESSLQ
::. : : : ::: :: .. .
CCDS32 KDKVRQFMACTQAGERTAIYCLTQNEWRLDEATDSFFQNPDS---LHRESMRNAVDK--K
10 20 30 40 50 60
90 100 110 120 130 140
pF1KE3 RLEELFRRYKDER-EDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFF
.::.:. :::: . :. : .:...::.:: .::. . ::..::::.:::.:.:.::::.
CCDS32 KLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKEFL
70 80 90 100 110 120
150 160 170 180 190 200
pF1KE3 DGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIAL
:: .. ::.. . : .: : : :. ::::.:.::: :. .. ::..: :.:.:
CCDS32 DGMTELGCDSMEKLKALLPRLEQELKDTAKFKDFYQFTFTFA--KNPGQKGLDLEMAVAY
130 140 150 160 170 180
210 220 230 240 250 260
pF1KE3 WKLVFTQNNPPVLDQWLNFLTENPSGIKGISRDTWNMFLNFTQVIGPDLSNYSEDEAWPS
::::.. . :: : .:: :. . ..: :::::..:.: ..:. :.:::.:. :::
CCDS32 WKLVLS-GRFKFLDLWNTFLMEHHK--RSIPRDTWNLLLDFGNMIADDMSNYDEEGAWPV
190 200 210 220 230
270 280 290 300
pF1KE3 LFDTFVEWEMERRKREGEGRGALSSGPEGLCPEEQT
:.: :::.
CCDS32 LIDDFVEYARPVVTGGKRSLF
240 250
>>CCDS77862.1 DCUN1D1 gene_id:54165|Hs109|chr3 (244 aa)
initn: 556 init1: 295 opt: 564 Z-score: 651.9 bits: 128.4 E(33420): 5.6e-30
Smith-Waterman score: 564; 43.9% identity (77.2% similar) in 189 aa overlap (89-276:48-231)
60 70 80 90 100 110
pF1KE3 AEAATEACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDER-EDAILEEGMERFCND
..::.:. :::: . :. : .:...::.:
CCDS77 NDWKLDVATDNFFQNPELYIRESVKGSLDRKKLEQLYNRYKDPQDENKIGIDGIQQFCDD
20 30 40 50 60 70
120 130 140 150 160 170
pF1KE3 LCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQED
: .::. . ::..::::.:::.:.:...::.:: .. :::. . :..:.. : :.
CCDS77 LALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGCDSIEKLKAQIPKMEQELKEPG
80 90 100 110 120 130
180 190 200 210 220 230
pF1KE3 KFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNPPVLDQWLNFLTENPSGIKG
.:::.:.:::.:. .. ::..: :.::: :.::.. . :: : .:: :. . ..
CCDS77 RFKDFYQFTFNFA--KNPGQKGLDLEMAIAYWNLVLN-GRFKFLDLWNKFLLEHHK--RS
140 150 160 170 180 190
240 250 260 270 280 290
pF1KE3 ISRDTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKREGEGRGALSSGPEG
: .::::..:.:. .:. :.:::.:. ::: :.: :::.
CCDS77 IPKDTWNLLLDFSTMIADDMSNYDEEGAWPVLIDDFVEFARPQIAGTKSTTV
200 210 220 230 240
300
pF1KE3 LCPEEQT
>>CCDS3240.1 DCUN1D1 gene_id:54165|Hs109|chr3 (259 aa)
initn: 556 init1: 295 opt: 564 Z-score: 651.5 bits: 128.4 E(33420): 5.9e-30
Smith-Waterman score: 564; 43.9% identity (77.2% similar) in 189 aa overlap (89-276:63-246)
60 70 80 90 100 110
pF1KE3 AEAATEACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDER-EDAILEEGMERFCND
..::.:. :::: . :. : .:...::.:
CCDS32 NDWKLDVATDNFFQNPELYIRESVKGSLDRKKLEQLYNRYKDPQDENKIGIDGIQQFCDD
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE3 LCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQED
: .::. . ::..::::.:::.:.:...::.:: .. :::. . :..:.. : :.
CCDS32 LALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGCDSIEKLKAQIPKMEQELKEPG
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 KFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNPPVLDQWLNFLTENPSGIKG
.:::.:.:::.:. .. ::..: :.::: :.::.. . :: : .:: :. . ..
CCDS32 RFKDFYQFTFNFA--KNPGQKGLDLEMAIAYWNLVLN-GRFKFLDLWNKFLLEHHK--RS
160 170 180 190 200
240 250 260 270 280 290
pF1KE3 ISRDTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKREGEGRGALSSGPEG
: .::::..:.:. .:. :.:::.:. ::: :.: :::.
CCDS32 IPKDTWNLLLDFSTMIADDMSNYDEEGAWPVLIDDFVEFARPQIAGTKSTTV
210 220 230 240 250
300
pF1KE3 LCPEEQT
>>CCDS8325.1 DCUN1D5 gene_id:84259|Hs109|chr11 (237 aa)
initn: 357 init1: 224 opt: 397 Z-score: 460.6 bits: 93.0 E(33420): 2.5e-19
Smith-Waterman score: 397; 32.8% identity (67.2% similar) in 201 aa overlap (81-281:41-235)
60 70 80 90 100 110
pF1KE3 ILVNGTKKAEAATEACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAILEEG
:. :. : .. : .: : .. ::
CCDS83 GVAAAVAEDGGLKKCKISSYCRSQPPARLISGEEHFSSKKCLAWFYEYAGPDE-VVGPEG
20 30 40 50 60
120 130 140 150 160 170
pF1KE3 MERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLL
::.::.:. :.: .. .:.::::..: .: ::..:.. : ... : . . .: :
CCDS83 MEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEKLQNKFDFLR
70 80 90 100 110 120
180 190 200 210 220 230
pF1KE3 TEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNPPVLDQWLNFLTE
.. .. ..::..::..:.:. :.. :::: . : .. :.. .. : ... . ..: .
CCDS83 SQLNDISSFKNIYRYAFDFARDKD--QRSLDIDTAKSMLALLLGRTWP-LFSVFYQYLEQ
130 140 150 160 170 180
240 250 260 270 280 290
pF1KE3 NPSGIKGISRDTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKREGEGRGA
: . ...: : :.:.... :::::.:: ::: :.: ::::. :.
CCDS83 --SKYRVMNKDQWYNVLEFSRTVHADLSNYDEDGAWPVLLDEFVEWQKVRQTS
190 200 210 220 230
300
pF1KE3 LSSGPEGLCPEEQT
>>CCDS33982.1 DCUN1D4 gene_id:23142|Hs109|chr4 (292 aa)
initn: 332 init1: 200 opt: 396 Z-score: 458.1 bits: 92.8 E(33420): 3.5e-19
Smith-Waterman score: 396; 35.3% identity (63.2% similar) in 204 aa overlap (80-281:95-290)
50 60 70 80 90 100
pF1KE3 DILVNGTKKAEAATEACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAILEE
:.. : : .: : : .: .:.. :
CCDS33 KKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGT-DDVVGPE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 GMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSL
:::.::.:. :.: . .:.::::..: .: :: .:.. : ... :. . . . :
CCDS33 GMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 LTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNP--PVLDQWLNF
. .. .:: .::..:.:. :. :::: . : . :.. . : ::. :.:
CCDS33 RSFLNDSTNFKLIYRYAFDFA--REKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFL--
190 200 210 220 230
230 240 250 260 270 280
pF1KE3 LTENPSGIKGISRDTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKREGEG
. : : :..: : :.:...:. :::::.:: ::: :.: :::: ...
CCDS33 ---EQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
240 250 260 270 280 290
290 300
pF1KE3 RGALSSGPEGLCPEEQT
>>CCDS75123.1 DCUN1D4 gene_id:23142|Hs109|chr4 (336 aa)
initn: 332 init1: 200 opt: 396 Z-score: 457.2 bits: 92.8 E(33420): 3.9e-19
Smith-Waterman score: 396; 35.3% identity (63.2% similar) in 204 aa overlap (80-281:139-334)
50 60 70 80 90 100
pF1KE3 DILVNGTKKAEAATEACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAILEE
:.. : : .: : : .: .:.. :
CCDS75 KKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGT-DDVVGPE
110 120 130 140 150 160
110 120 130 140 150 160
pF1KE3 GMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSL
:::.::.:. :.: . .:.::::..: .: :: .:.. : ... :. . . . :
CCDS75 GMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYL
170 180 190 200 210 220
170 180 190 200 210 220
pF1KE3 LTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNP--PVLDQWLNF
. .. .:: .::..:.:. :. :::: . : . :.. . : ::. :.:
CCDS75 RSFLNDSTNFKLIYRYAFDFA--REKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFL--
230 240 250 260 270 280
230 240 250 260 270 280
pF1KE3 LTENPSGIKGISRDTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKREGEG
. : : :..: : :.:...:. :::::.:: ::: :.: :::: ...
CCDS75 ---EQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
290 300 310 320 330
290 300
pF1KE3 RGALSSGPEGLCPEEQT
304 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Aug 4 20:41:31 2021 done: Wed Aug 4 20:41:31 2021
Total Scan time: 1.240 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]