FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3887, 342 aa
  1>>>pF1KE3887     342 - 342 aa - 342 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3700+/-0.000936; mu= 11.6736+/- 0.056
 mean_var=92.2253+/-18.634, 0's: 0 Z-trim(107.3): 19  B-trim: 156 in 1/50
 Lambda= 0.133552
 statistics sampled from 9636 (9641) to 9636 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.288), width:  16
 Scan time:  1.260

The best scores are:                                      opt bits E(33420)
CCDS7100.1 PRPF18 gene_id:8559|Hs109|chr10         ( 342) 2224 438.6 3.7e-123


>>CCDS7100.1 PRPF18 gene_id:8559|Hs109|chr10              (342 aa)
 initn: 2224 init1: 2224 opt: 2224  Z-score: 2324.7  bits: 438.6 E(33420): 3.7e-123
Smith-Waterman score: 2224; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)

               10        20        30        40        50        60
pF1KE3 MDILKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MDILKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KGLRNDLKAALDKIDQQYLNEIVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 KGLRNDLKAALDKIDQQYLNEIVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSK
              250       260       270       280       290       300

              310       320       330       340  
pF1KE3 HVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL
       ::::::::::::::::::::::::::::::::::::::::::
CCDS71 HVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL
              310       320       330       340  




342 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Aug  4 20:40:52 2021 done: Wed Aug  4 20:40:52 2021
 Total Scan time:  1.260 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]