FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3883, 228 aa
  1>>>pF1KE3883     228 - 228 aa - 228 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4975+/-0.000792; mu= 14.3996+/- 0.048
 mean_var=76.2485+/-14.560, 0's: 0 Z-trim(107.4): 16  B-trim: 0 in 0/54
 Lambda= 0.146879
 statistics sampled from 9645 (9652) to 9645 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.289), width:  16
 Scan time:  0.980

The best scores are:                                      opt bits E(33420)
CCDS1315.1 CACYBP gene_id:27101|Hs109|chr1         ( 228) 1451 316.4   1e-86
CCDS30942.1 CACYBP gene_id:27101|Hs109|chr1        ( 185) 1202 263.6 6.4e-71


>>CCDS1315.1 CACYBP gene_id:27101|Hs109|chr1              (228 aa)
 initn: 1451 init1: 1451 opt: 1451  Z-score: 1670.7  bits: 316.4 E(33420): 1e-86
Smith-Waterman score: 1451; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)

               10        20        30        40        50        60
pF1KE3 MASEELQKDLEEVKVLLEKATRKRVRDALTAEKSKIETEIKNKMQQKSQKKAELLDNEKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MASEELQKDLEEVKVLLEKATRKRVRDALTAEKSKIETEIKNKMQQKSQKKAELLDNEKP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 AAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 NGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKEKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKEKPS
              130       140       150       160       170       180

              190       200       210       220        
pF1KE3 YDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAKGDTEF
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAKGDTEF
              190       200       210       220        

>>CCDS30942.1 CACYBP gene_id:27101|Hs109|chr1             (185 aa)
 initn: 1202 init1: 1202 opt: 1202  Z-score: 1386.9  bits: 263.6 E(33420): 6.4e-71
Smith-Waterman score: 1202; 100.0% identity (100.0% similar) in 185 aa overlap (44-228:1-185)

            20        30        40        50        60        70   
pF1KE3 KVLLEKATRKRVRDALTAEKSKIETEIKNKMQQKSQKKAELLDNEKPAAVVAPITTGYTV
                                     ::::::::::::::::::::::::::::::
CCDS30                               MQQKSQKKAELLDNEKPAAVVAPITTGYTV
                                             10        20        30

            80        90       100       110       120       130   
pF1KE3 KISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLL
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KE3 KPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMN
              100       110       120       130       140       150

           200       210       220        
pF1KE3 VLKKIYEDGDDDMKRTINKAWVESREKQAKGDTEF
       :::::::::::::::::::::::::::::::::::
CCDS30 VLKKIYEDGDDDMKRTINKAWVESREKQAKGDTEF
              160       170       180     




228 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Aug  4 20:38:43 2021 done: Wed Aug  4 20:38:43 2021
 Total Scan time:  0.980 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]