FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3805, 230 aa
  1>>>pF1KE3805 230 - 230 aa - 230 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4425+/-0.000721; mu= 13.0598+/- 0.043
 mean_var=64.8790+/-12.669, 0's: 0 Z-trim(108.8): 14  B-trim: 63 in 2/50
 Lambda= 0.159229
 statistics sampled from 10424 (10431) to 10424 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.32), width:  16
 Scan time:  2.140

The best scores are:                                      opt bits E(32554)
CCDS3879.1 ROPN1L gene_id:83853|Hs108|chr5         ( 230) 1552 364.9 2.5e-101
CCDS3026.1 ROPN1 gene_id:54763|Hs108|chr3          ( 212)  542 132.9 1.6e-31
CCDS33841.1 ROPN1B gene_id:152015|Hs108|chr3       ( 212)  523 128.5 3.3e-30


>>CCDS3879.1 ROPN1L gene_id:83853|Hs108|chr5              (230 aa)
 initn: 1552 init1: 1552 opt: 1552  Z-score: 1932.7  bits: 364.9 E(32554): 2.5e-101
Smith-Waterman score: 1552; 99.6% identity (99.6% similar) in 230 aa overlap (1-230:1-230)

               10        20        30        40        50        60
pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS38 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
              130       140       150       160       170       180

              190       200       210       220       230
pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
              190       200       210       220       230

>>CCDS3026.1 ROPN1 gene_id:54763|Hs108|chr3               (212 aa)
 initn: 542 init1: 316 opt: 542  Z-score: 679.4  bits: 132.9 E(32554): 1.6e-31
Smith-Waterman score: 542; 39.8% identity (72.8% similar) in 206 aa overlap (15-220:10-212)

               10        20        30        40        50        60
pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
                     :::::: .::.:.:::::.:: :...:.: :: :::::.  ::..:
CCDS30      MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
        :  .  ....  ::  :::.::.:   .  ..  .: : :: . :: . :......   
CCDS30 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
          60          70        80        90       100       110   

              130       140       150       160       170       180
pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS
        ..:.:..::::.:: :: ... .:: .::.:. :..::  ::::.::...: :.:..:.
CCDS30 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG
           120       130       140       150       160       170   

              190       200       210       220       230
pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
       ..:  ..  .:  ..... .  .:.: ..::    :  ::          
CCDS30 EISASHVSRMLNYMEQEVIG-PDGIITVNDFTQNPRVQLE          
           180       190        200       210            

>>CCDS33841.1 ROPN1B gene_id:152015|Hs108|chr3            (212 aa)
 initn: 531 init1: 305 opt: 523  Z-score: 655.8  bits: 128.5 E(32554): 3.3e-30
Smith-Waterman score: 523; 39.3% identity (71.8% similar) in 206 aa overlap (15-220:10-212)

               10        20        30        40        50        60
pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
                     :::::: .::.:.:::::.:: :...:.: :: :::::.  ::..:
CCDS33      MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
        :  .  . ..  ::  :::.::.:   .  ..  .: : :: . :: . :......   
CCDS33 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
          60          70        80        90       100       110   

              130       140       150       160       170       180
pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS
        ..:.:..::::.:: :: ... .:: .::.:. :..::  ::::.::...: :.:..:.
CCDS33 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG
           120       130       140       150       160       170   

              190       200       210       220       230
pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
       ..   ..  .:  ..... .  .:.: ..::    :  ::          
CCDS33 EICASHVSRMLNYIEQEVIG-PDGLITVNDFTQNPRVWLE          
           180       190        200       210            




230 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:37:39 2016 done: Sun Nov  6 06:37:40 2016
 Total Scan time:  2.140 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]