Result of FASTA (omim) for
pFN21AE3801
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3801, 69 aa
1>>>pF1KE3801 69 - 69 aa - 69 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1823+/-0.000248; mu= 8.1654+/- 0.016
mean_var=60.6035+/-12.004, 0's: 0 Z-trim(121.4): 31 B-trim: 2181 in 1/54
Lambda= 0.164750
statistics sampled from 37884 (37915) to 37884 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.445), width: 16
Scan time: 3.690
The best scores are: opt bits E(85289)
NP_001185685 (OMIM: 139391) guanine nucleotide-bin ( 69) 448 113.5 2.7e-26
NP_001185683 (OMIM: 139391) guanine nucleotide-bin ( 69) 448 113.5 2.7e-26
NP_001185684 (OMIM: 139391) guanine nucleotide-bin ( 69) 448 113.5 2.7e-26
NP_113686 (OMIM: 139391) guanine nucleotide-bindin ( 69) 448 113.5 2.7e-26
NP_004117 (OMIM: 604390) guanine nucleotide-bindin ( 73) 299 78.1 1.3e-15
NP_001316355 (OMIM: 189970) guanine nucleotide-bin ( 74) 294 77.0 3e-15
NP_068774 (OMIM: 189970) guanine nucleotide-bindin ( 74) 294 77.0 3e-15
XP_016882095 (OMIM: 604430) PREDICTED: guanine nuc ( 68) 175 48.7 9e-07
NP_443079 (OMIM: 604430) guanine nucleotide-bindin ( 68) 175 48.7 9e-07
NP_061329 (OMIM: 615405) guanine nucleotide-bindin ( 72) 167 46.8 3.5e-06
XP_016857298 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 167 46.8 3.5e-06
XP_016857300 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 167 46.8 3.5e-06
XP_016857299 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 167 46.8 3.5e-06
XP_016876866 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 157 44.4 1.8e-05
XP_011535148 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 157 44.4 1.8e-05
NP_444292 (OMIM: 606981) guanine nucleotide-bindin ( 71) 157 44.4 1.8e-05
XP_006720236 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 157 44.4 1.8e-05
NP_001230703 (OMIM: 606981) guanine nucleotide-bin ( 71) 157 44.4 1.8e-05
NP_001230702 (OMIM: 606981) guanine nucleotide-bin ( 71) 157 44.4 1.8e-05
XP_016876865 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 157 44.4 1.8e-05
NP_036334 (OMIM: 608941) guanine nucleotide-bindin ( 75) 148 42.3 8.4e-05
XP_006718563 (OMIM: 608941) PREDICTED: guanine nuc ( 75) 148 42.3 8.4e-05
NP_001017998 (OMIM: 604389) guanine nucleotide-bin ( 68) 147 42.0 9.1e-05
NP_001185593 (OMIM: 604389) guanine nucleotide-bin ( 68) 147 42.0 9.1e-05
NP_001092191 (OMIM: 604388) guanine nucleotide-bin ( 75) 138 39.9 0.00044
XP_006711824 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 138 39.9 0.00044
NP_001092192 (OMIM: 604388) guanine nucleotide-bin ( 75) 138 39.9 0.00044
NP_004476 (OMIM: 604388) guanine nucleotide-bindin ( 75) 138 39.9 0.00044
XP_011542469 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 138 39.9 0.00044
NP_005265 (OMIM: 600874) guanine nucleotide-bindin ( 68) 131 38.2 0.0013
>>NP_001185685 (OMIM: 139391) guanine nucleotide-binding (69 aa)
initn: 448 init1: 448 opt: 448 Z-score: 593.1 bits: 113.5 E(85289): 2.7e-26
Smith-Waterman score: 448; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:1-69)
10 20 30 40 50 60
pF1KE3 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
10 20 30 40 50 60
pF1KE3 KEKGGCLIS
:::::::::
NP_001 KEKGGCLIS
>>NP_001185683 (OMIM: 139391) guanine nucleotide-binding (69 aa)
initn: 448 init1: 448 opt: 448 Z-score: 593.1 bits: 113.5 E(85289): 2.7e-26
Smith-Waterman score: 448; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:1-69)
10 20 30 40 50 60
pF1KE3 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
10 20 30 40 50 60
pF1KE3 KEKGGCLIS
:::::::::
NP_001 KEKGGCLIS
>>NP_001185684 (OMIM: 139391) guanine nucleotide-binding (69 aa)
initn: 448 init1: 448 opt: 448 Z-score: 593.1 bits: 113.5 E(85289): 2.7e-26
Smith-Waterman score: 448; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:1-69)
10 20 30 40 50 60
pF1KE3 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
10 20 30 40 50 60
pF1KE3 KEKGGCLIS
:::::::::
NP_001 KEKGGCLIS
>>NP_113686 (OMIM: 139391) guanine nucleotide-binding pr (69 aa)
initn: 448 init1: 448 opt: 448 Z-score: 593.1 bits: 113.5 E(85289): 2.7e-26
Smith-Waterman score: 448; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:1-69)
10 20 30 40 50 60
pF1KE3 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
10 20 30 40 50 60
pF1KE3 KEKGGCLIS
:::::::::
NP_113 KEKGGCLIS
>>NP_004117 (OMIM: 604390) guanine nucleotide-binding pr (73 aa)
initn: 299 init1: 299 opt: 299 Z-score: 401.4 bits: 78.1 E(85289): 1.3e-15
Smith-Waterman score: 299; 65.7% identity (88.1% similar) in 67 aa overlap (3-69:7-73)
10 20 30 40 50
pF1KE3 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
.:: ::. ::::::::.:::: : .:: ..:::.:.: ..:.::..::::::
NP_004 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
10 20 30 40 50 60
60
pF1KE3 KNPFKEKGGCLIS
::::::::.:.::
NP_004 KNPFKEKGSCVIS
70
>>NP_001316355 (OMIM: 189970) guanine nucleotide-binding (74 aa)
initn: 292 init1: 260 opt: 294 Z-score: 394.8 bits: 77.0 E(85289): 3e-15
Smith-Waterman score: 294; 64.7% identity (86.8% similar) in 68 aa overlap (3-69:7-74)
10 20 30 40 50
pF1KE3 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
.::.::: :::::.:::::: :. .:: .:...::: ..:.::..::::::
NP_001 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
10 20 30 40 50 60
60
pF1KE3 KNPFKE-KGGCLIS
:::::: ::::.::
NP_001 KNPFKELKGGCVIS
70
>>NP_068774 (OMIM: 189970) guanine nucleotide-binding pr (74 aa)
initn: 292 init1: 260 opt: 294 Z-score: 394.8 bits: 77.0 E(85289): 3e-15
Smith-Waterman score: 294; 64.7% identity (86.8% similar) in 68 aa overlap (3-69:7-74)
10 20 30 40 50
pF1KE3 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
.::.::: :::::.:::::: :. .:: .:...::: ..:.::..::::::
NP_068 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
10 20 30 40 50 60
60
pF1KE3 KNPFKE-KGGCLIS
:::::: ::::.::
NP_068 KNPFKELKGGCVIS
70
>>XP_016882095 (OMIM: 604430) PREDICTED: guanine nucleot (68 aa)
initn: 197 init1: 175 opt: 175 Z-score: 242.5 bits: 48.7 E(85289): 9e-07
Smith-Waterman score: 175; 48.1% identity (74.1% similar) in 54 aa overlap (15-68:14-67)
10 20 30 40 50 60
pF1KE3 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
::::. :. :: .:::.... : : .: :::.: :.: ..:::
XP_016 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPF
10 20 30 40 50
pF1KE3 KEKGGCLIS
:.: :.:
XP_016 KDKKPCIIL
60
>>NP_443079 (OMIM: 604430) guanine nucleotide-binding pr (68 aa)
initn: 197 init1: 175 opt: 175 Z-score: 242.5 bits: 48.7 E(85289): 9e-07
Smith-Waterman score: 175; 48.1% identity (74.1% similar) in 54 aa overlap (15-68:14-67)
10 20 30 40 50 60
pF1KE3 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
::::. :. :: .:::.... : : .: :::.: :.: ..:::
NP_443 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPF
10 20 30 40 50
pF1KE3 KEKGGCLIS
:.: :.:
NP_443 KDKKPCIIL
60
>>NP_061329 (OMIM: 615405) guanine nucleotide-binding pr (72 aa)
initn: 178 init1: 160 opt: 167 Z-score: 231.9 bits: 46.8 E(85289): 3.5e-06
Smith-Waterman score: 167; 46.3% identity (74.1% similar) in 54 aa overlap (15-68:18-71)
10 20 30 40 50
pF1KE3 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDK
:.::. :.. :: .:::. .. : : .: .::.: ::: ..
NP_061 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
10 20 30 40 50 60
60
pF1KE3 NPFKEKGGCLIS
::::.: :.:
NP_061 NPFKDKKTCIIL
70
69 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 06:38:41 2016 done: Sun Nov 6 06:38:42 2016
Total Scan time: 3.690 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]