FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3760, 494 aa
  1>>>pF1KE3760 494 - 494 aa - 494 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3433+/-0.000915; mu= -1.6330+/- 0.056
 mean_var=324.2865+/-64.489, 0's: 0 Z-trim(117.5): 10  B-trim: 0 in 0/54
 Lambda= 0.071221
 statistics sampled from 18304 (18314) to 18304 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.563), width:  16
 Scan time:  3.820

The best scores are:                                      opt bits E(32554)
CCDS1811.1 ZFP36L2 gene_id:678|Hs108|chr2          ( 494) 3401 362.6 5.6e-100
CCDS9791.1 ZFP36L1 gene_id:677|Hs108|chr14         ( 338)  674 82.2 9.5e-16


>>CCDS1811.1 ZFP36L2 gene_id:678|Hs108|chr2               (494 aa)
 initn: 3401 init1: 3401 opt: 3401  Z-score: 1908.4  bits: 362.6 E(32554): 5.6e-100
Smith-Waterman score: 3401; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)

               10        20        30        40        50        60
pF1KE3 MSTTLLSAFYDVDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRRHSASN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MSTTLLSAFYDVDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRRHSASN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 DRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 DRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGTRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 ALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 SSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCAN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 NAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 NAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 AAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 AAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG
              430       440       450       460       470       480

              490    
pF1KE3 RRLPIFSRLSISDD
       ::::::::::::::
CCDS18 RRLPIFSRLSISDD
              490    

>>CCDS9791.1 ZFP36L1 gene_id:677|Hs108|chr14              (338 aa)
 initn: 941 init1: 552 opt: 674  Z-score: 396.2  bits: 82.2 E(32554): 9.5e-16
Smith-Waterman score: 902; 43.1% identity (56.9% similar) in 501 aa overlap (1-494:1-338)

                10         20           30        40        50     
pF1KE3 MSTTLLSA-FYDV-DFLCKTEKSL---ANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRR
       :.:::.:: ..:. . ::: .: :   :    . .::.::::::...        :: ::
CCDS97 MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGG--------GFPRR
               10        20        30        40                50  

          60        70        80        90       100       110     
pF1KE3 HSASNLHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNK
       ::..         ::      ::    . ..  :.  : :.       :      :: ..
CCDS97 HSVT--------LPSS-----KF----HQNQLLSSLKGEPA-------P------ALSSR
                     60                 70                     80  

         120       130       140       150       160       170     
pF1KE3 ENKFRDRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQ
       ...::::::::.:.:   ::  :.:    ::.:.::.::::::::::::.:.::::.:::
CCDS97 DSRFRDRSFSEGGER---LLPTQKQP---GGGQVNSSRYKTELCRPFEENGACKYGDKCQ
             90          100          110       120       130      

         180       190       200       210       220       230     
pF1KE3 FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRA
       ::::.::::::::::::::::::::::::::::::::::::::.:::    .::  :: :
CCDS97 FAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRAL--AGAR-DLSA
        140       150       160       170       180          190   

         240       250       260       270       280       290     
pF1KE3 FGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSS
                      ::.:.::.::.::::.     .   .  ::::::: ::::     
CCDS97 --------------DRPRLQHSFSFAGFPSA----AATAAATGLLDSPTSITPPP-----
                         200       210           220       230     

         300       310       320       330       340       350     
pF1KE3 ASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSS
                                            .:    .:.:::  :.:    . 
CCDS97 -------------------------------------IL----SADDLL--GSP----TL
                                                         240       

         360        370       380       390       400       410    
pF1KE3 ASCANNAFAFGP-ELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPS
        . .:: :::.  ::.::          ::                            ::
CCDS97 PDGTNNPFAFSSQELASL----------FA----------------------------PS
           250       260                                           

          420       430       440        450       460       470   
pF1KE3 ATLPAGAAAPPSPPFSFQLPRRLSDSP-VFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSE
         ::.:..     : .: : : .:.:: .::.:::: :::::...:::.:  :.: :::.
CCDS97 MGLPGGGS-----PTTF-LFRPMSESPHMFDSPPSPQDSLSDQEGYLSSS--SSSHSGSD
         270             280       290       300         310       

           480       490    
pF1KE3 SPSLDPGRRLPIFSRLSISDD
       ::.:: .::::::::::::::
CCDS97 SPTLDNSRRLPIFSRLSISDD
       320       330        




494 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 07:09:14 2016 done: Sun Nov  6 07:09:15 2016
 Total Scan time:  3.820 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]