FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3757, 395 aa
  1>>>pF1KE3757 395 - 395 aa - 395 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0257+/-0.000894; mu= 14.1785+/- 0.053
 mean_var=107.8547+/-22.927, 0's: 0 Z-trim(109.1): 70  B-trim: 7 in 1/49
 Lambda= 0.123497
 statistics sampled from 10590 (10656) to 10590 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.327), width:  16
 Scan time:  2.570

The best scores are:                                      opt bits E(32554)
CCDS4542.1 NHLRC1 gene_id:378884|Hs108|chr6        ( 395) 2698 491.4 5.8e-139


>>CCDS4542.1 NHLRC1 gene_id:378884|Hs108|chr6             (395 aa)
 initn: 2698 init1: 2698 opt: 2698  Z-score: 2608.3  bits: 491.4 E(32554): 5.8e-139
Smith-Waterman score: 2698; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)

               10        20        30        40        50        60
pF1KE3 MAAEASESGPALHELMREAEISLLECKVCFEKFGHRQQRRPRNLSCGHVVCLACVAALAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAAEASESGPALHELMREAEISLLECKVCFEKFGHRQQRRPRNLSCGHVVCLACVAALAH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 PRTLALECPFCRRACRGCDTSDCLPVLHLIELLGSALRQSPAAHRAAPSAPGALTCHHTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PRTLALECPFCRRACRGCDTSDCLPVLHLIELLGSALRQSPAAHRAAPSAPGALTCHHTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GGWGTLVNPTGLALCPKTGRVVVVHDGRRRVKIFDSGGGCAHQFGEKGDAAQDIRYPVDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GGWGTLVNPTGLALCPKTGRVVVVHDGRRRVKIFDSGGGCAHQFGEKGDAAQDIRYPVDV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TITNDCHVVVTDAGDRSIKVFDFFGQIKLVIGGQFSLPWGVETTPQNGIVVTDAEAGSLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TITNDCHVVVTDAGDRSIKVFDFFGQIKLVIGGQFSLPWGVETTPQNGIVVTDAEAGSLH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 LLDVDFAEGVLRRTERLQAHLCNPRGVAVSWLTGAIAVLEHPLALGTGVCSTRVKVFSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLDVDFAEGVLRRTERLQAHLCNPRGVAVSWLTGAIAVLEHPLALGTGVCSTRVKVFSSS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 MQLVGQVDTFGLSLYFPSKITASAVTFDHQGNVIVADTSGPAILCLGKPEEFPVPKPMVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MQLVGQVDTFGLSLYFPSKITASAVTFDHQGNVIVADTSGPAILCLGKPEEFPVPKPMVT
              310       320       330       340       350       360

              370       380       390     
pF1KE3 HGLSHPVALTFTKENSLLVLDTASHSIKVYKVDWG
       :::::::::::::::::::::::::::::::::::
CCDS45 HGLSHPVALTFTKENSLLVLDTASHSIKVYKVDWG
              370       380       390     




395 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 07:42:33 2016 done: Sun Nov  6 07:42:33 2016
 Total Scan time:  2.570 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]