FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3755, 361 aa
  1>>>pF1KE3755 361 - 361 aa - 361 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5651+/-0.000674; mu= 16.5207+/- 0.041
 mean_var=79.6585+/-15.562, 0's: 0 Z-trim(111.2): 14  B-trim: 0 in 0/53
 Lambda= 0.143700
 statistics sampled from 12153 (12164) to 12153 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.374), width:  16
 Scan time:  3.000

The best scores are:                                      opt bits E(32554)
CCDS13559.1 PCMTD2 gene_id:55251|Hs108|chr20       ( 361) 2405 507.6 6.6e-144
CCDS6148.1 PCMTD1 gene_id:115294|Hs108|chr8        ( 357) 1631 347.2 1.3e-95
CCDS46631.1 PCMTD2 gene_id:55251|Hs108|chr20       ( 334) 1306 279.8 2.4e-75
CCDS69480.1 PCMTD1 gene_id:115294|Hs108|chr8       ( 281)  815 177.9 9.1e-45


>>CCDS13559.1 PCMTD2 gene_id:55251|Hs108|chr20            (361 aa)
 initn: 2405 init1: 2405 opt: 2405  Z-score: 2697.1  bits: 507.6 E(32554): 6.6e-144
Smith-Waterman score: 2405; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)

               10        20        30        40        50        60
pF1KE3 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 IHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMKNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMKNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LKVGGILVMPLEEKLTKITRTGPSAWETKKILAVSFAPLIQPCHSESGKSRLVQLPPVAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LKVGGILVMPLEEKLTKITRTGPSAWETKKILAVSFAPLIQPCHSESGKSRLVQLPPVAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 RSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRRMETIVFLDKEVFAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRRMETIVFLDKEVFAS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 RISNPSDDNSCEDLEEERREEEEKTPPETKPDPPVNFLRQKVLSLPLPDPLKYYLLYYRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RISNPSDDNSCEDLEEERREEEEKTPPETKPDPPVNFLRQKVLSLPLPDPLKYYLLYYRE
              310       320       330       340       350       360

        
pF1KE3 K
       :
CCDS13 K
        

>>CCDS6148.1 PCMTD1 gene_id:115294|Hs108|chr8             (357 aa)
 initn: 1632 init1: 1408 opt: 1631  Z-score: 1829.9  bits: 347.2 E(32554): 1.3e-95
Smith-Waterman score: 1631; 67.5% identity (86.5% similar) in 363 aa overlap (1-361:1-357)

               10        20        30        40        50        60
pF1KE3 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGN
       ::::::::::::.:::::::::::::: ::::::::::.::::: ...::::::::::::
CCDS61 MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 IHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEY
       :::::::::::::::: ::::::::::::::::::.::::::::::.:::.::::::.::
CCDS61 IHLSAPCIYSEVMEALKLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMKNL
       ::.::. ::..:::::::.::::.::.::::.:. :  ::::.::::::::.::.::: :
CCDS61 AKEKLESFIKNSDSFDKFEFCEPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LKVGGILVMPLEEKLTKITRTGPSAWETKKILAVSFAPLIQPCHSESGKSRLVQLPPVAV
       ::::::::::.:..::.: ::: ..::.:.:::::::::.:: ....::   : ::: ::
CCDS61 LKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKNDNGKPDSVGLPPCAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 RSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRRMETIVFLDKEVFAS
       :.::::::: :: :....:..:  .: :   .  :. ::.::..: ..: ::. ...   
CCDS61 RNLQDLARIYIRRTLRNFINDEMQAK-GIPQRAPPKRKRKRVKQR-INTYVFVGNQL---
              250       260        270       280        290        

              310       320        330        340       350        
pF1KE3 RISNPSDDNSCEDLEEERREEEEKTPPET-KPD-PPVNFLRQKVLSLPLPDPLKYYLLYY
        : .: :..  : .::. .:::::   :. ::. :: :.::.:...::::. :: :: :.
CCDS61 -IPQPLDSEEDEKMEEDNKEEEEKDHNEAMKPEEPPQNLLREKIMKLPLPESLKAYLTYF
          300       310       320       330       340       350    

      360 
pF1KE3 REK
       :.:
CCDS61 RDK
          

>>CCDS46631.1 PCMTD2 gene_id:55251|Hs108|chr20            (334 aa)
 initn: 1388 init1: 1306 opt: 1306  Z-score: 1466.2  bits: 279.8 E(32554): 2.4e-75
Smith-Waterman score: 2172; 92.5% identity (92.5% similar) in 361 aa overlap (1-361:1-334)

               10        20        30        40        50        60
pF1KE3 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 IHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMKNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMKNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LKVGGILVMPLEEKLTKITRTGPSAWETKKILAVSFAPLIQPCHSESGKSRLVQLPPVAV
       ::::::::::::::                           :::::::::::::::::::
CCDS46 LKVGGILVMPLEEK---------------------------PCHSESGKSRLVQLPPVAV
              190                                  200       210   

              250       260       270       280       290       300
pF1KE3 RSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRRMETIVFLDKEVFAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRRMETIVFLDKEVFAS
           220       230       240       250       260       270   

              310       320       330       340       350       360
pF1KE3 RISNPSDDNSCEDLEEERREEEEKTPPETKPDPPVNFLRQKVLSLPLPDPLKYYLLYYRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RISNPSDDNSCEDLEEERREEEEKTPPETKPDPPVNFLRQKVLSLPLPDPLKYYLLYYRE
           280       290       300       310       320       330   

        
pF1KE3 K
       :
CCDS46 K
        

>>CCDS69480.1 PCMTD1 gene_id:115294|Hs108|chr8            (281 aa)
 initn: 816 init1: 592 opt: 815  Z-score: 917.2  bits: 177.9 E(32554): 9.1e-45
Smith-Waterman score: 815; 55.1% identity (80.2% similar) in 227 aa overlap (137-361:61-281)

        110       120       130       140       150       160      
pF1KE3 VNHGVELHSDVIEYAKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCG
                                     .:.::::.::.::::.:. :  ::::.:::
CCDS69 PCCYCGGSGVWLLRTPPSPSAWPARRCPRHRFEFCEPAFVVGNCLQIASDSHQYDRIYCG
               40        50        60        70        80        90

        170       180       190       200       210       220      
pF1KE3 AGVQKEHEEYMKNLLKVGGILVMPLEEKLTKITRTGPSAWETKKILAVSFAPLIQPCHSE
       :::::.::.::: :::::::::::.:..::.: ::: ..::.:.:::::::::.:: ...
CCDS69 AGVQKDHENYMKILLKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKND
              100       110       120       130       140       150

        230       240       250       260       270       280      
pF1KE3 SGKSRLVQLPPVAVRSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRR
       .::   : ::: :::.::::::: :: :....:..:  .: :   .  :. ::.::..: 
CCDS69 NGKPDSVGLPPCAVRNLQDLARIYIRRTLRNFINDEMQAK-GIPQRAPPKRKRKRVKQR-
              160       170       180       190        200         

        290       300       310       320        330        340    
pF1KE3 METIVFLDKEVFASRISNPSDDNSCEDLEEERREEEEKTPPET-KPD-PPVNFLRQKVLS
       ..: ::. ...    : .: :..  : .::. .:::::   :. ::. :: :.::.:...
CCDS69 INTYVFVGNQL----IPQPLDSEEDEKMEEDNKEEEEKDHNEAMKPEEPPQNLLREKIMK
      210           220       230       240       250       260    

          350       360 
pF1KE3 LPLPDPLKYYLLYYREK
       ::::. :: :: :.:.:
CCDS69 LPLPESLKAYLTYFRDK
          270       280 




361 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 07:51:59 2016 done: Sun Nov  6 07:51:59 2016
 Total Scan time:  3.000 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]