Result of FASTA (ccds) for
pFN21AE3752
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3752, 158 aa
1>>>pF1KE3752 158 - 158 aa - 158 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2300+/-0.000592; mu= 13.3232+/- 0.036
mean_var=69.7396+/-13.887, 0's: 0 Z-trim(113.0): 66 B-trim: 0 in 0/51
Lambda= 0.153580
statistics sampled from 13608 (13675) to 13608 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.42), width: 16
Scan time: 1.820
The best scores are: opt bits E(32554)
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 1113 254.5 2e-68
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 422 101.4 2.4e-22
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 418 100.5 4.4e-22
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 368 89.3 7.9e-19
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 349 85.2 1.7e-17
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 349 85.2 1.7e-17
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 349 85.2 1.7e-17
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 347 84.7 2.3e-17
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 339 83.0 8e-17
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 333 81.6 2e-16
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 328 80.5 3.6e-16
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 325 79.8 5.8e-16
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 317 78.2 3e-15
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 316 78.0 3.6e-15
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 312 77.0 5.4e-15
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 310 76.6 8e-15
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 310 76.6 8.6e-15
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 310 76.7 9.6e-15
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 298 74.0 5.5e-14
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 295 73.2 7.1e-14
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 285 70.9 2.5e-13
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 274 68.6 2e-12
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 272 68.2 2.8e-12
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 267 67.0 4.9e-12
CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 165) 265 66.6 7.6e-12
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 264 66.4 1e-11
CCDS627.1 UBE2U gene_id:148581|Hs108|chr1 ( 226) 264 66.5 1.1e-11
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 256 64.6 2.9e-11
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 255 64.5 4.3e-11
>>CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 (158 aa)
initn: 1113 init1: 1113 opt: 1113 Z-score: 1341.9 bits: 254.5 E(32554): 2e-68
Smith-Waterman score: 1113; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KE3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL
70 80 90 100 110 120
130 140 150
pF1KE3 NEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
::::::::::::::::::::::::::::::::::::::
CCDS10 NEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
130 140 150
>>CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 (152 aa)
initn: 404 init1: 239 opt: 422 Z-score: 514.7 bits: 101.4 E(32554): 2.4e-22
Smith-Waterman score: 422; 42.7% identity (70.7% similar) in 150 aa overlap (1-150:1-143)
10 20 30 40 50 60
pF1KE3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL
:: : :: .. : ..: : : ..:..: :.:.:. .: : .:::.: : :::
CCDS41 MSTPARRRLMRDFKRLQEDPPVGVSGAPSEN-----NIMQWNAVIFGPEGTPFEDGTFKL
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL
. :...::..:: .: .:::::: .:..::.::.. : :. ...:: .:: ::
CCDS41 VIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNR--WSPTYDVSSILTSIQSLL
60 70 80 90 100 110
130 140 150
pF1KE3 NEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
.::: ..::...: .: .:. :::::: :
CCDS41 DEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS
120 130 140 150
>>CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX (152 aa)
initn: 400 init1: 237 opt: 418 Z-score: 509.9 bits: 100.5 E(32554): 4.4e-22
Smith-Waterman score: 418; 42.7% identity (69.3% similar) in 150 aa overlap (1-150:1-143)
10 20 30 40 50 60
pF1KE3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL
:: : :: .. : ..: : : ..:..: :.: :. .: : .:::.: : :::
CCDS14 MSTPARRRLMRDFKRLQEDPPAGVSGAPSEN-----NIMVWNAVIFGPEGTPFEDGTFKL
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL
. : ..::..:: .: .:::::: .:..::.::.. : :. ...:: .:: ::
CCDS14 TIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNR--WSPTYDVSSILTSIQSLL
60 70 80 90 100 110
130 140 150
pF1KE3 NEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
.::: ..::...: .: .:. :::::: :
CCDS14 DEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWRDC
120 130 140 150
>>CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX (119 aa)
initn: 344 init1: 228 opt: 368 Z-score: 451.5 bits: 89.3 E(32554): 7.9e-19
Smith-Waterman score: 368; 46.4% identity (74.1% similar) in 112 aa overlap (39-150:1-110)
10 20 30 40 50 60
pF1KE3 LAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY
: :. .: : .:::.: : ::: . : ..:
CCDS78 MVWNAVIFGPEGTPFEDGTFKLTIEFTEEY
10 20 30
70 80 90 100 110 120
pF1KE3 PSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP
:..:: .: .:::::: .:..::.::.. : :. ...:: .:: ::.::: ..:
CCDS78 PNKPPTVRFVSKMFHPNVYADGSICLDILQN--RWSPTYDVSSILTSIQSLLDEPNPNSP
40 50 60 70 80
130 140 150
pF1KE3 AQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
:...: .: .:. :::::: :
CCDS78 ANSQAAQLYQENKREYEKRVSAIVEQSWRDC
90 100 110
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 292 init1: 207 opt: 349 Z-score: 427.5 bits: 85.2 E(32554): 1.7e-17
Smith-Waterman score: 349; 34.6% identity (64.7% similar) in 153 aa overlap (4-156:1-146)
10 20 30 40 50 60
pF1KE3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL
.::.:. .: ..: : : :. . .:..:. .: : . .:..::.: :
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGD-----DLFHWQATIMGPNDSPYQGGVFFL
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL
. : ::: .::: : ..:::. .:..::.::. ..: ::.:....::.: ::
CCDS54 TIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLSICSLL
60 70 80 90 100 110
130 140 150
pF1KE3 NEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
.:: .:: : : .: .:.. .: ..:.:
CCDS54 CDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM
120 130 140
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 316 init1: 203 opt: 349 Z-score: 427.5 bits: 85.2 E(32554): 1.7e-17
Smith-Waterman score: 349; 35.3% identity (65.4% similar) in 153 aa overlap (4-156:1-146)
10 20 30 40 50 60
pF1KE3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL
.::.:. .: . .: : : :. . ....:. .: : . .:..::.: :
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFL
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL
. : ::: .::: : ..:::. .:..::.::. ..: ::.::...::.: ::
CCDS43 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKVLLSICSLL
60 70 80 90 100 110
130 140 150
pF1KE3 NEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
.:: .:: : :: .: .:.. .: ..:.:
CCDS43 CDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM
120 130 140
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 315 init1: 203 opt: 349 Z-score: 427.4 bits: 85.2 E(32554): 1.7e-17
Smith-Waterman score: 349; 35.3% identity (65.4% similar) in 153 aa overlap (4-156:1-146)
10 20 30 40 50 60
pF1KE3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL
.::.:. .: . .: : : :. . ....:. .: : . .:..::.: :
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFL
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL
. : ::: .::: : ..:::. .:..::.::. ..: ::.::...::.: ::
CCDS36 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKVLLSICSLL
60 70 80 90 100 110
130 140 150
pF1KE3 NEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
.:: .:: : :: .: .:.. .: ..:.:
CCDS36 CDPNPDDPLVPEIARIYKTDRDKYNRLAREWTEKYAML
120 130 140
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 297 init1: 203 opt: 347 Z-score: 425.1 bits: 84.7 E(32554): 2.3e-17
Smith-Waterman score: 347; 35.3% identity (64.7% similar) in 153 aa overlap (4-156:1-146)
10 20 30 40 50 60
pF1KE3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL
.::.:. .: . .: : : :. . ....:. .: : . .:..::.: :
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFL
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL
. : ::: .::: : ..:::. .:..::.::. ..: ::.::...::.: ::
CCDS36 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKVLLSICSLL
60 70 80 90 100 110
130 140 150
pF1KE3 NEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
.:: .:: : :: .: .:.. : ..:.:
CCDS36 CDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 302 init1: 193 opt: 339 Z-score: 415.5 bits: 83.0 E(32554): 8e-17
Smith-Waterman score: 339; 33.3% identity (66.0% similar) in 153 aa overlap (4-156:1-146)
10 20 30 40 50 60
pF1KE3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL
.::.:. .: . ..: : : :. . .:..:. .: : . ..::.: :
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGD-----DLFHWQATIMGPPDSAYQGGVFFL
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL
. : ::: .::: : ..:::. .:..::.::. ..: ::.:....::.: ::
CCDS72 TVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLSICSLL
60 70 80 90 100 110
130 140 150
pF1KE3 NEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
.:: .:: . :: ... .:....: ..:.:
CCDS72 CDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
120 130 140
>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa)
initn: 297 init1: 203 opt: 333 Z-score: 408.2 bits: 81.6 E(32554): 2e-16
Smith-Waterman score: 333; 35.8% identity (64.9% similar) in 148 aa overlap (9-156:8-148)
10 20 30 40 50 60
pF1KE3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL
:..: . .: : : . .: : ....:. .: : . .:..::.: :
CCDS36 MLSNRKCLSKELSDLARDPP----AQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFL
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL
. : ::: .::: : ..:::. .:..::.::. ..: ::.::...::.: ::
CCDS36 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKVLLSICSLL
60 70 80 90 100 110
130 140 150
pF1KE3 NEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
.:: .:: : :: .: .:.. : ..:.:
CCDS36 CDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
158 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 07:53:03 2016 done: Sun Nov 6 07:53:04 2016
Total Scan time: 1.820 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]