Result of FASTA (ccds) for
pFN21AE3711
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3711, 359 aa
1>>>pF1KE3711 359 - 359 aa - 359 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7641+/-0.000769; mu= 14.4778+/- 0.047
mean_var=223.0593+/-46.485, 0's: 0 Z-trim(117.0): 32 B-trim: 146 in 1/50
Lambda= 0.085874
statistics sampled from 17606 (17637) to 17606 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.542), width: 16
Scan time: 3.420
The best scores are: opt bits E(32554)
CCDS55274.1 POU5F1B gene_id:5462|Hs108|chr8 ( 359) 2518 323.9 1.3e-88
CCDS34391.1 POU5F1 gene_id:5460|Hs108|chr6 ( 360) 2413 310.9 1.1e-84
CCDS47398.2 POU5F1 gene_id:5460|Hs108|chr6 ( 190) 1251 166.6 1.6e-41
CCDS75420.1 POU5F1 gene_id:5460|Hs108|chr6 ( 164) 1086 146.0 2.1e-35
CCDS33265.1 POU3F3 gene_id:5455|Hs108|chr2 ( 500) 666 94.7 1.8e-19
CCDS59489.1 POU5F2 gene_id:134187|Hs108|chr5 ( 328) 661 93.8 2.2e-19
CCDS30679.1 POU3F1 gene_id:5453|Hs108|chr1 ( 451) 639 91.3 1.8e-18
CCDS14450.1 POU3F4 gene_id:5456|Hs108|chrX ( 361) 634 90.5 2.4e-18
CCDS5040.1 POU3F2 gene_id:5454|Hs108|chr6 ( 443) 635 90.8 2.5e-18
CCDS55655.1 POU2F1 gene_id:5451|Hs108|chr1 ( 703) 559 81.6 2.2e-15
CCDS55656.1 POU2F1 gene_id:5451|Hs108|chr1 ( 755) 559 81.7 2.3e-15
CCDS1259.2 POU2F1 gene_id:5451|Hs108|chr1 ( 766) 559 81.7 2.3e-15
CCDS8431.1 POU2F3 gene_id:25833|Hs108|chr11 ( 436) 532 78.0 1.7e-14
CCDS58190.1 POU2F3 gene_id:25833|Hs108|chr11 ( 438) 532 78.0 1.7e-14
CCDS31996.1 POU4F1 gene_id:5457|Hs108|chr13 ( 419) 489 72.6 6.6e-13
CCDS2919.1 POU1F1 gene_id:5449|Hs108|chr3 ( 291) 463 69.2 5e-12
CCDS46873.1 POU1F1 gene_id:5449|Hs108|chr3 ( 317) 463 69.3 5.3e-12
CCDS4281.1 POU4F3 gene_id:5459|Hs108|chr5 ( 338) 431 65.3 8.5e-11
>>CCDS55274.1 POU5F1B gene_id:5462|Hs108|chr8 (359 aa)
initn: 2518 init1: 2518 opt: 2518 Z-score: 1704.4 bits: 323.9 E(32554): 1.3e-88
Smith-Waterman score: 2518; 99.4% identity (99.7% similar) in 359 aa overlap (1-359:1-359)
10 20 30 40 50 60
pF1KE3 MAGHLASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGGPGIGPGVGPGSEVWGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAGHLASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGGPGIGPGVGPGSEVWGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCTVPPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCTVPPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 AVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 QTTICRFEALQLSFKNMCKLRPLLQKWVEEADNDENLQEICKAETLMQARKRKRTSIENR
: :::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS55 QKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLMQARKRKRTSIENR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 VRGNLENLFLQCPKPTLQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VRGNLENLFLQCPKPTLQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAA
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 GSPFSGGPVSFPPAPGPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GSPFSGGPVSFPPAPGPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN
310 320 330 340 350
>>CCDS34391.1 POU5F1 gene_id:5460|Hs108|chr6 (360 aa)
initn: 1735 init1: 1735 opt: 2413 Z-score: 1634.1 bits: 310.9 E(32554): 1.1e-84
Smith-Waterman score: 2413; 95.8% identity (97.8% similar) in 360 aa overlap (1-359:1-360)
10 20 30 40 50 60
pF1KE3 MAGHLASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGGPGIGPGVGPGSEVWGI
:::::::::::::::::::::: : ::::::: :::::::::::::::::::::::::::
CCDS34 MAGHLASDFAFSPPPGGGGDGPGGPEPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCTVPPG
::::::::.:::::::::::::::::::::::::::.::::::::::.::::::::: ::
CCDS34 PPCPPPYEFCGGMAYCGPQVGVGLVPQGGLETSQPEGEAGVGVESNSDGASPEPCTVTPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 AVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFS
::::::::::::::.:::::::::::::::::::::::::::::::::: ::::::::::
CCDS34 AVKLEKEKLEQNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 QTTICRFEALQLSFKNMCKLRPLLQKWVEEADNDENLQEICKAETLMQARKRKRTSIENR
:::::::::::::::::::::::::::::::::.::::::::::::.:::::::::::::
CCDS34 QTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENR
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 VRGNLENLFLQCPKPTLQ-ISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEA
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS34 VRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 AGSPFSGGPVSFPPAPGPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN
::::::::::::: :::::::::::::::::::::::::::::.:::::: :::::::::
CCDS34 AGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGEAFPPVSVTTLGSPMHSN
310 320 330 340 350 360
>>CCDS47398.2 POU5F1 gene_id:5460|Hs108|chr6 (190 aa)
initn: 697 init1: 697 opt: 1251 Z-score: 858.9 bits: 166.6 E(32554): 1.6e-41
Smith-Waterman score: 1251; 96.3% identity (98.4% similar) in 190 aa overlap (171-359:1-190)
150 160 170 180 190 200
pF1KE3 ALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQTTICRFEALQLSFKNMCKL
.:::::::::::::::::::::::::::::
CCDS47 MGVLFGKVFSQTTICRFEALQLSFKNMCKL
10 20 30
210 220 230 240 250
pF1KE3 RPLLQKWVEEADNDENLQEICKAETLMQARKRKRTSIENRVRGNLENLFLQCPKPTLQ-I
:::::::::::::.::::::::::::.::::::::::::::::::::::::::::::: :
CCDS47 RPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQI
40 50 60 70 80 90
260 270 280 290 300 310
pF1KE3 SHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPPAPGPHF
::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
CCDS47 SHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPLAPGPHF
100 110 120 130 140 150
320 330 340 350
pF1KE3 GTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN
:::::::::::::::::::::::.:::::: :::::::::
CCDS47 GTPGYGSPHFTALYSSVPFPEGEAFPPVSVTTLGSPMHSN
160 170 180 190
>>CCDS75420.1 POU5F1 gene_id:5460|Hs108|chr6 (164 aa)
initn: 697 init1: 697 opt: 1086 Z-score: 749.1 bits: 146.0 E(32554): 2.1e-35
Smith-Waterman score: 1086; 96.3% identity (98.2% similar) in 164 aa overlap (197-359:1-164)
170 180 190 200 210 220
pF1KE3 VGLILGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNDENLQEICKAETL
:::::::::::::::::.::::::::::::
CCDS75 MCKLRPLLQKWVEEADNNENLQEICKAETL
10 20 30
230 240 250 260 270 280
pF1KE3 MQARKRKRTSIENRVRGNLENLFLQCPKPTLQ-ISHIAQQLGLEKDVVRVWFCNRRQKGK
.::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
CCDS75 VQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGK
40 50 60 70 80 90
290 300 310 320 330 340
pF1KE3 RSSSDYAQREDFEAAGSPFSGGPVSFPPAPGPHFGTPGYGSPHFTALYSSVPFPEGEVFP
::::::::::::::::::::::::::: :::::::::::::::::::::::::::::.::
CCDS75 RSSSDYAQREDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGEAFP
100 110 120 130 140 150
350
pF1KE3 PVSVITLGSPMHSN
:::: :::::::::
CCDS75 PVSVTTLGSPMHSN
160
>>CCDS33265.1 POU3F3 gene_id:5455|Hs108|chr2 (500 aa)
initn: 695 init1: 477 opt: 666 Z-score: 462.9 bits: 94.7 E(32554): 1.8e-19
Smith-Waterman score: 686; 43.3% identity (60.7% similar) in 328 aa overlap (13-320:177-494)
10 20 30
pF1KE3 MAGHLASDFAFSPPPGGGGDGPWGAEPGWVD-----------
::: : : ::: . .
CCDS33 PDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHL
150 160 170 180 190 200
40 50 60 70 80 90
pF1KE3 PLTWLSFQGPPGGPGIG-PGVGPGSEVWGIPPCPPPYELCGGMAYCGPQVGVGLVPQGGL
: . : :: . . :: : : :. :: :: : : : .:: : .
CCDS33 PSMAGGQQPPPQSLLYSQPG---GFTVNGMLSAPPGPGGGGGGAGGGAQ---SLVHPGLV
210 220 230 240 250 260
100 110 120 130 140
pF1KE3 ETSQPE-SEAGVGVESNSNGASPEPCTV--PP---GAVKLEKEKLEQNPEKSQDIKALQK
. . :: .: . ... :.: . :: :. :... .:.. .
CCDS33 RGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGGGGGGAGPGLNSHDPHSDEDTPTSD
270 280 290 300 310 320
150 160 170 180 190 200
pF1KE3 ELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLL
.:::::: .::.:: ::.::::::: ::.:.:.:::::::::::::::::::::::.:::
CCDS33 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL
330 340 350 360 370 380
210 220 230 240 250 260
pF1KE3 QKWVEEADNDENLQEICKAETLMQARKRK-RTSIENRVRGNLENLFLQCPKPTLQ-ISHI
.::.::::.. . . . :.:::: ::::: :.: ::. ::.::::. : :...
CCDS33 NKWLEEADSSTG-SPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNL
390 400 410 420 430
270 280 290 300 310 320
pF1KE3 AQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPPAPGPHFGTP
:..: :::.:::::::::::: :: . :.. . . : : :: .: :: :
CCDS33 ADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQV--GTVS-ADTPPPHHGLQ
440 450 460 470 480 490
330 340 350
pF1KE3 GYGSPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN
CCDS33 TSVQ
500
>>CCDS59489.1 POU5F2 gene_id:134187|Hs108|chr5 (328 aa)
initn: 783 init1: 430 opt: 661 Z-score: 461.4 bits: 93.8 E(32554): 2.2e-19
Smith-Waterman score: 901; 47.8% identity (65.1% similar) in 341 aa overlap (1-335:1-311)
10 20 30 40 50
pF1KE3 MAGHLASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGG----PGIGPGVGPGSE
:::: :. : : ::.:: :: : : :: ::::: :. :: :.. ::. :: .
CCDS59 MAGHRPSNH-FCPLPGSGGGGPRGPMPLRVDTLTWLSTQAAPGRVMVWPAVRPGICPGPD
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 VWGIPPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCT
:: :: : :.:. : .: : :..:. :::: .. :.:: : :
CCDS59 VWRIPLGPLPHEFRGWIAPCRPRLGA--------------SEAGDWLRRPSEGALPGPYI
60 70 80 90 100
120 130 140 150 160 170
pF1KE3 VPPGAVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFG
. . :: :: ::... :::.:.:: :.:::..:::.:::::. .:.:::
CCDS59 ALRSIPKLPP------PE---DISGILKELQQLAKELRQKRLSLGYSQADVGIAVGALFG
110 120 130 140 150
180 190 200 210 220 230
pF1KE3 KVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNDENLQEICKAETLMQAR-KRKRT
::.:::::::::: ::: :: ::::::.::..:.. ::: .:: : ..: : .:.
CCDS59 KVLSQTTICRFEAQQLSVANMWKLRPLLKKWLKEVEA-ENLLGLCKMEMILQQSGKWRRA
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE3 SIENRVRGNLENLFLQCPKPT-LQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQR
: : :. ..::..: .::::: :::::: : :.:::::::: :: . :.: ..: . :
CCDS59 SRERRIGNSLEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPR
220 230 240 250 260 270
300 310 320 330 340 350
pF1KE3 EDFEAAGSPFSGGPVSFPPAPGPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGS
: .:: : :.:: : . .: : ::.: :::.
CCDS59 EIVGTAGPPCPGAPVCFHLG----LGLP-VDIPHYTRLYSAGVAHSSAPATTLGLLRF
280 290 300 310 320
pF1KE3 PMHSN
>>CCDS30679.1 POU3F1 gene_id:5453|Hs108|chr1 (451 aa)
initn: 672 init1: 465 opt: 639 Z-score: 445.3 bits: 91.3 E(32554): 1.8e-18
Smith-Waterman score: 689; 43.4% identity (60.3% similar) in 343 aa overlap (2-317:134-435)
10 20
pF1KE3 MAGHLASDFAFSPPPGG-GGDGPW-------
: ::. :.:: ::. :: :
CCDS30 DDGGGGGGFHARLVHQGAAHAGAAWAQGSTAHHLGP--AMSPSPGASGGHQPQPLGLYAQ
110 120 130 140 150 160
30 40 50 60 70
pF1KE3 GAEPGWVDPLTWLSFQGPPGGPGIGPGVG-----PGSEVWGIPPCPPPYELCGGMAYCGP
.: :: :. . :: : :::. : :. . : :::. : :.
CCDS30 AAYPG--GGGGGLAGMLAAGGGGAGPGLHHALHEDGHEAQ-LEPSPPPHLGAHGHAH---
170 180 190 200 210
80 90 100 110 120 130
pF1KE3 QVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCTVPPGAVKLEKEKLEQNPEKSQD
: . :::... . . :.: ..: : :. ... .:.:
CCDS30 ----GHAHAGGLHAAAAHLHPGAGGGGSSVG-----------------EHSDEDAPSSDD
220 230 240 250
140 150 160 170 180 190
pF1KE3 IKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQTTICRFEALQLSFKNMC
:::::: .::.:: ::.::::::: ::.:.:.:::::::::::::::::::::
CCDS30 -------LEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMC
260 270 280 290 300
200 210 220 230 240 250
pF1KE3 KLRPLLQKWVEEADNDE----NLQEICKAETLMQARKRK-RTSIENRVRGNLENLFLQCP
::.:::.::.::.:.. ::..: :.:::: ::::: :.: ::. ::.::
CCDS30 KLKPLLNKWLEETDSSSGSPTNLDKIAA-----QGRKRKKRTSIEVGVKGALESHFLKCP
310 320 330 340 350 360
260 270 280 290 300
pF1KE3 KPTL-QISHIAQQLGLEKDVVRVWFCNRRQKGKR----SSSDYAQREDFEAAG--SPFSG
::. .:. .:..: :::.:::::::::::: :: ... . .: : : .: .:
CCDS30 KPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAAGAGHPPMDDVYAPGELGPGGG
370 380 390 400 410 420
310 320 330 340 350
pF1KE3 G--PVSFPPAPGPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN
: : : :: : :
CCDS30 GASPPSAPPPPPPAALHHHHHHTLPGSVQ
430 440 450
>>CCDS14450.1 POU3F4 gene_id:5456|Hs108|chrX (361 aa)
initn: 629 init1: 478 opt: 634 Z-score: 442.9 bits: 90.5 E(32554): 2.4e-18
Smith-Waterman score: 650; 49.2% identity (68.0% similar) in 244 aa overlap (58-294:114-343)
30 40 50 60 70 80
pF1KE3 GWVDPLTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYELCGGM---AYCGPQVGV-G
:: : : : .:. .: : : :
CCDS14 GREDLQLGAIIHHRSPHVAHHSPHTNHPNAWGASPAPNPSITSSGQPLNVYSQPGFTVSG
90 100 110 120 130 140
90 100 110 120 130 140
pF1KE3 LVPQGGLETSQPESEAGVGVESNSNGASPEPCTV-PPGAVKLEKEKLEQNPEKSQDIKAL
.. .::: . : . : .. : .: :: .: ... . ..:..
CCDS14 MLEHGGL--TPPPAAA--------SAQSLHPVLREPPDHGELGSHHCQ---DHSDEETPT
150 160 170 180 190
150 160 170 180 190 200
pF1KE3 QKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQTTICRFEALQLSFKNMCKLRP
. ::::::: .::.:: ::.::::::: ::.:.:.:::::::::::::::::::::::.:
CCDS14 SDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKP
200 210 220 230 240 250
210 220 230 240 250 260
pF1KE3 LLQKWVEEADNDENLQEICKAETLMQARKRK-RTSIENRVRGNLENLFLQCPKPTLQ-IS
::.::.::::.. . . . :.:::: ::::: :.: ::. ::.::::. : ::
CCDS14 LLNKWLEEADSSTG-SPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEIS
260 270 280 290 300
270 280 290 300 310 320
pF1KE3 HIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPPAPGPHFG
.:..: :::.:::::::::::: :: . :.
CCDS14 SLADSLQLEKEVVRVWFCNRRQKEKRMTPPGDQQPHEVYSHTVKTDTSCHDL
310 320 330 340 350 360
330 340 350
pF1KE3 TPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN
>>CCDS5040.1 POU3F2 gene_id:5454|Hs108|chr6 (443 aa)
initn: 719 init1: 479 opt: 635 Z-score: 442.7 bits: 90.8 E(32554): 2.5e-18
Smith-Waterman score: 650; 43.8% identity (62.6% similar) in 281 aa overlap (49-316:163-437)
20 30 40 50 60 70
pF1KE3 GDGPWGAEPGWVDPLTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYELC-GGMAYCG
:: : . . :: . ::. :
CCDS50 QQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQ
140 150 160 170 180 190
80 90 100 110 120
pF1KE3 PQ------VGVGLVPQG----GLETSQPESEAGVGVESNSNGASPEPCTVPPGAVKLEKE
:. .:.: : : ::. .. : . . . .: :: .
CCDS50 PSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHP
200 210 220 230 240 250
130 140 150 160 170 180
pF1KE3 KLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQTTICRF
...:....: . . .:::::: .::.:: ::.::::::: ::.:.:.::::::::::
CCDS50 GAHHDPHSDEDTPT-SDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRF
260 270 280 290 300 310
190 200 210 220 230 240
pF1KE3 EALQLSFKNMCKLRPLLQKWVEEADNDENLQEICKAETLMQARKRK-RTSIENRVRGNLE
:::::::::::::.:::.::.::::.. . . . :.:::: ::::: :.: ::
CCDS50 EALQLSFKNMCKLKPLLNKWLEEADSSSG-SPTSIDKIAAQGRKRKKRTSIEVSVKGALE
320 330 340 350 360 370
250 260 270 280 290 300
pF1KE3 NLFLQCPKPTLQ-ISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFS
. ::.::::. : :. .:..: :::.:::::::::::: :: . . : .
CCDS50 SHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDV----Y
380 390 400 410 420
310 320 330 340 350
pF1KE3 GGPVSFPPAPGPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN
:: . :: :
CCDS50 GGSRDTPPHHGVQTPVQ
430 440
>>CCDS55655.1 POU2F1 gene_id:5451|Hs108|chr1 (703 aa)
initn: 549 init1: 335 opt: 559 Z-score: 389.7 bits: 81.6 E(32554): 2.2e-15
Smith-Waterman score: 559; 39.6% identity (62.1% similar) in 293 aa overlap (78-348:172-446)
50 60 70 80 90 100
pF1KE3 GPGVGPGSEVWGIPPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPE-SEAGVGVESN
:: ::. .: :. :. :.:.. .
CCDS55 LQQQNLNLQQFVLVHPTTNLQPAQFIISQTPQGQQGLLQAQNLLTQLPQQSQANLLQSQP
150 160 170 180 190 200
110 120 130 140 150
pF1KE3 SNGASPEPCTVPP---GAVKLEKEKLEQNPEKSQDIKALQK-----ELEQFAKLLKQKRI
: . .: : : .:. .. :. : : .:.. ::::::: .::.::
CCDS55 SITLTSQPAT-PTRTIAATPIQTLPQSQSTPKRIDTPSLEEPSDLEELEQFAKTFKQRRI
210 220 230 240 250 260
160 170 180 190 200 210
pF1KE3 TLGYTQADVGLILGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNDENLQ
::.::.:::: .: :.:. :::::: :::::.:::::::::.:::.::...:.: . .
CCDS55 KLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDS
270 280 290 300 310 320
220 230 240 250 260 270
pF1KE3 EICKAETL-------MQARKRKRTSIENRVRGNLENLFLQCPKPTLQ-ISHIAQQLGLEK
. . .: .. :..::::::. .: ::. ::. ::: . :. ::.::..::
CCDS55 SLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEK
330 340 350 360 370 380
280 290 300 310 320
pF1KE3 DVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFP-----PAPGPHFGTPGYG
.:.:::::::::: :: . : ::: : : :.: .:
CCDS55 EVIRVWFCNRRQKEKR-------------INPPSSGGTSSSPIKAIFPSPTSLVAT----
390 400 410 420
330 340 350
pF1KE3 SPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN
.: ... ... . . :.: .:
CCDS55 TPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTGTSDTTSNNTATVISTAPPASSAVTSPS
430 440 450 460 470 480
359 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 07:43:39 2016 done: Tue Nov 8 07:43:40 2016
Total Scan time: 3.420 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]