FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3710, 288 aa
  1>>>pF1KE3710 288 - 288 aa - 288 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0944+/-0.00075; mu= 11.2950+/- 0.046
 mean_var=210.7015+/-42.455, 0's: 0 Z-trim(116.5): 108  B-trim: 0 in 0/54
 Lambda= 0.088357
 statistics sampled from 17021 (17144) to 17021 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.527), width:  16
 Scan time:  3.000

The best scores are:                                      opt bits E(32554)
CCDS43985.1 RHOXF2B gene_id:727940|Hs108|chrX      ( 288) 2003 266.9 1.3e-71
CCDS14594.1 RHOXF2 gene_id:84528|Hs108|chrX        ( 288) 1981 264.1 8.7e-71


>>CCDS43985.1 RHOXF2B gene_id:727940|Hs108|chrX           (288 aa)
 initn: 2003 init1: 2003 opt: 2003  Z-score: 1399.4  bits: 266.9 E(32554): 1.3e-71
Smith-Waterman score: 2003; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KE3 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 PQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
              190       200       210       220       230       240

              250       260       270       280        
pF1KE3 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
              250       260       270       280        

>>CCDS14594.1 RHOXF2 gene_id:84528|Hs108|chrX             (288 aa)
 initn: 1981 init1: 1981 opt: 1981  Z-score: 1384.3  bits: 264.1 E(32554): 8.7e-71
Smith-Waterman score: 1981; 99.3% identity (99.7% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KE3 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSR
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS14 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 PQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQI
       :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
CCDS14 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
              190       200       210       220       230       240

              250       260       270       280        
pF1KE3 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
              250       260       270       280        




288 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:42:33 2016 done: Sun Nov  6 06:42:34 2016
 Total Scan time:  3.000 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]