FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3705, 138 aa
  1>>>pF1KE3705 138 - 138 aa - 138 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6355+/-0.000798; mu= 10.3801+/- 0.048
 mean_var=75.0121+/-14.531, 0's: 0 Z-trim(108.6): 32  B-trim: 131 in 1/50
 Lambda= 0.148084
 statistics sampled from 10292 (10317) to 10292 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.317), width:  16
 Scan time:  1.540

The best scores are:                                      opt bits E(32554)
CCDS115.1 CENPS gene_id:378708|Hs108|chr1          ( 138)  867 193.8 2.9e-50
CCDS114.1 CORT gene_id:100526739|Hs108|chr1        ( 164)  586 133.8 3.9e-32
CCDS53266.1 CORT gene_id:100526739|Hs108|chr1      (  77)  448 104.1 1.6e-23


>>CCDS115.1 CENPS gene_id:378708|Hs108|chr1               (138 aa)
 initn: 867 init1: 867 opt: 867  Z-score: 1016.0  bits: 193.8 E(32554): 2.9e-50
Smith-Waterman score: 867; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KE3 MEEEAETEEQQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEEEAETEEQQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKKSED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKKSED
               70        80        90       100       110       120

              130        
pF1KE3 GSKNSRQPAEAGVVESEN
       ::::::::::::::::::
CCDS11 GSKNSRQPAEAGVVESEN
              130        

>>CCDS114.1 CORT gene_id:100526739|Hs108|chr1             (164 aa)
 initn: 586 init1: 586 opt: 586  Z-score: 690.4  bits: 133.8 E(32554): 3.9e-32
Smith-Waterman score: 586; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92)

               10        20        30        40        50        60
pF1KE3 MEEEAETEEQQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEEEAETEEQQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKKSED
       ::::::::::::::::::::::::::::::::                            
CCDS11 FAKDLEMFARHAKRTTINTEDVKLLARRSNSLHMQEAAGIRKSSLLTFLAWWFEWTSQAS
               70        80        90       100       110       120

              130                                  
pF1KE3 GSKNSRQPAEAGVVESEN                          
                                                   
CCDS11 AGPLIGEEAREVARRQEGAPPQQSARRDRMPCRNFFWKTFSSCK
              130       140       150       160    

>>CCDS53266.1 CORT gene_id:100526739|Hs108|chr1           (77 aa)
 initn: 448 init1: 448 opt: 448  Z-score: 536.0  bits: 104.1 E(32554): 1.6e-23
Smith-Waterman score: 448; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:1-69)

               10        20        30        40        50        60
pF1KE3 MEEEAETEEQQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MEEEAETEEQQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKKSED
       :::::::::                                                   
CCDS53 FAKDLEMFASICRKRQE                                           
               70                                                  




138 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:53:09 2016 done: Mon Nov  7 18:53:09 2016
 Total Scan time:  1.540 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]