Result of FASTA (omim) for
pFN21AE3694
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3694, 92 aa
1>>>pF1KE3694 92 - 92 aa - 92 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6078+/-0.000264; mu= 12.3235+/- 0.016
mean_var=51.3069+/-10.354, 0's: 0 Z-trim(119.9): 68 B-trim: 344 in 2/52
Lambda= 0.179055
statistics sampled from 34507 (34585) to 34507 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.406), width: 16
Scan time: 4.100
The best scores are: opt bits E(85289)
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 623 167.6 2.6e-42
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 602 162.1 1.1e-40
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 570 153.8 3.3e-38
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- ( 96) 441 120.5 3.9e-28
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103) 435 119.0 1.2e-27
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103) 432 118.2 2.1e-27
NP_001278399 (OMIM: 610757) C-C motif chemokine 4- ( 64) 427 116.8 3.4e-27
NP_001278398 (OMIM: 610757) C-C motif chemokine 4- ( 64) 427 116.8 3.4e-27
NP_001278402 (OMIM: 610757) C-C motif chemokine 4- ( 86) 427 116.9 4.3e-27
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 423 115.9 9.5e-27
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 423 115.9 9.5e-27
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 388 106.8 5e-24
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 311 87.0 4.9e-18
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 308 86.2 8.2e-18
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 295 82.8 8.2e-17
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 289 81.3 2.8e-16
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 270 76.4 7.8e-15
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 255 72.5 1.2e-13
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 252 71.7 1.9e-13
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 252 71.7 1.9e-13
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 252 71.8 2.8e-13
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 249 71.0 4e-13
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 249 71.0 4e-13
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 245 69.9 6.9e-13
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 236 67.6 3.4e-12
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 230 66.0 1e-11
NP_001265665 (OMIM: 187011) C-C motif chemokine 5 ( 154) 229 65.9 1.8e-11
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 217 62.7 1.2e-10
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 217 62.7 1.2e-10
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 217 62.7 1.2e-10
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 211 61.2 4e-10
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 205 59.6 1e-09
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 198 57.8 3.5e-09
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 197 57.6 4.8e-09
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 197 57.6 5.1e-09
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 193 56.5 7.3e-09
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 193 56.5 7.3e-09
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre ( 96) 188 55.2 1.8e-08
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 175 51.8 1.9e-07
NP_001278403 (OMIM: 610757) C-C motif chemokine 4- ( 68) 160 47.9 2.1e-06
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 156 46.9 5.5e-06
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 156 47.0 6.5e-06
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 156 47.0 6.5e-06
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 156 47.0 6.9e-06
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 156 47.0 6.9e-06
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 161 48.6 7.4e-06
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 155 46.7 7.8e-06
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 151 45.6 1.4e-05
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 150 45.4 1.6e-05
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 138 42.3 0.00015
>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr (92 aa)
initn: 623 init1: 623 opt: 623 Z-score: 880.5 bits: 167.6 E(85289): 2.6e-42
Smith-Waterman score: 623; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KE3 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE3 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
::::::::::::::::::::::::::::::::
NP_996 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
70 80 90
>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs (92 aa)
initn: 602 init1: 602 opt: 602 Z-score: 851.2 bits: 162.1 E(85289): 1.1e-40
Smith-Waterman score: 602; 96.7% identity (98.9% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KE3 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
:::::::::::.::::::: ::::::::::::::::::::::::::::::::::::::::
NP_002 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE3 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
:::::::::.::::::::::::::::::::::
NP_002 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN
70 80 90
>>NP_001278397 (OMIM: 610757) C-C motif chemokine 4-like (87 aa)
initn: 576 init1: 427 opt: 570 Z-score: 806.9 bits: 153.8 E(85289): 3.3e-38
Smith-Waterman score: 570; 94.6% identity (94.6% similar) in 92 aa overlap (1-92:1-87)
10 20 30 40 50 60
pF1KE3 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE3 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
:::: :::::::::::::::::::::::
NP_001 PAVV-----GKQVCADPSESWVQEYVYDLELN
70 80
>>NP_001278401 (OMIM: 610757) C-C motif chemokine 4-like (96 aa)
initn: 427 init1: 427 opt: 441 Z-score: 626.1 bits: 120.5 E(85289): 3.9e-28
Smith-Waterman score: 441; 84.0% identity (86.4% similar) in 81 aa overlap (1-81:1-81)
10 20 30 40 50 60
pF1KE3 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE3 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
:::: : .. : : :
NP_001 PAVVAAPGRIPSTRAAPHGPWSGRGRCLPQARDKAR
70 80 90
>>NP_001278404 (OMIM: 610757) C-C motif chemokine 4-like (103 aa)
initn: 427 init1: 427 opt: 435 Z-score: 617.3 bits: 119.0 E(85289): 1.2e-27
Smith-Waterman score: 435; 85.2% identity (87.7% similar) in 81 aa overlap (1-77:1-81)
10 20 30 40 50 60
pF1KE3 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE3 PAVVFQTKRGK--QVCA--DPSESWVQEYVYDLELN
:::: .: : :. ::
NP_001 PAVVEWKLQGVCFQCCSGKDPIHQSCPTWTMVRQRKMPTTGKG
70 80 90 100
>>NP_001278400 (OMIM: 610757) C-C motif chemokine 4-like (103 aa)
initn: 432 init1: 432 opt: 432 Z-score: 613.1 bits: 118.2 E(85289): 2.1e-27
Smith-Waterman score: 432; 97.0% identity (100.0% similar) in 66 aa overlap (1-66:1-66)
10 20 30 40 50 60
pF1KE3 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE3 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
::::..
NP_001 PAVVYRESASSAAPGRIPSTRAAPHGPWSGRGRCLPQARDKAR
70 80 90 100
>>NP_001278399 (OMIM: 610757) C-C motif chemokine 4-like (64 aa)
initn: 427 init1: 427 opt: 427 Z-score: 609.2 bits: 116.8 E(85289): 3.4e-27
Smith-Waterman score: 427; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE3 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE3 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
::::
NP_001 PAVV
>>NP_001278398 (OMIM: 610757) C-C motif chemokine 4-like (64 aa)
initn: 427 init1: 427 opt: 427 Z-score: 609.2 bits: 116.8 E(85289): 3.4e-27
Smith-Waterman score: 427; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE3 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE3 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
::::
NP_001 PAVV
>>NP_001278402 (OMIM: 610757) C-C motif chemokine 4-like (86 aa)
initn: 427 init1: 427 opt: 427 Z-score: 607.3 bits: 116.9 E(85289): 4.3e-27
Smith-Waterman score: 427; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE3 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE3 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
::::
NP_001 PAVVAAPHGPWSGRGRCLPQARDKAR
70 80
>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like (93 aa)
initn: 435 init1: 386 opt: 423 Z-score: 601.2 bits: 115.9 E(85289): 9.5e-27
Smith-Waterman score: 423; 59.8% identity (90.2% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KE3 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
:.. ...:..:. . :.:. .::::...: :::::::::.:..:.::..::.:::: ::.
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50 60
70 80 90
pF1KE3 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
:.:.: ::::.:::::::: :::.:: ::::.
NP_001 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
70 80 90
92 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 19:04:41 2016 done: Mon Nov 7 19:04:42 2016
Total Scan time: 4.100 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]