FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3692, 182 aa
  1>>>pF1KE3692 182 - 182 aa - 182 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9292+/-0.000588; mu= 11.7533+/- 0.036
 mean_var=96.2611+/-19.339, 0's: 0 Z-trim(115.5): 4  B-trim: 2 in 1/50
 Lambda= 0.130722
 statistics sampled from 16100 (16104) to 16100 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.818), E-opt: 0.2 (0.495), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS41495.1 MSRB2 gene_id:22921|Hs108|chr10        ( 182) 1286 251.4 2.3e-67
CCDS8973.1 MSRB3 gene_id:253827|Hs108|chr12        ( 192)  468 97.1 6.7e-21
CCDS31853.1 MSRB3 gene_id:253827|Hs108|chr12       ( 185)  466 96.7 8.4e-21


>>CCDS41495.1 MSRB2 gene_id:22921|Hs108|chr10             (182 aa)
 initn: 1286 init1: 1286 opt: 1286  Z-score: 1322.8  bits: 251.4 E(32554): 2.3e-67
Smith-Waterman score: 1286; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182)

               10        20        30        40        50        60
pF1KE3 MARLLWLLRGLTLGTAPRRAVRGQAGGGGPGTGPGLGEAGSLATCELPLAKSEWQKKLTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MARLLWLLRGLTLGTAPRRAVRGQAGGGGPGTGPGLGEAGSLATCELPLAKSEWQKKLTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPR
              130       140       150       160       170       180

         
pF1KE3 KH
       ::
CCDS41 KH
         

>>CCDS8973.1 MSRB3 gene_id:253827|Hs108|chr12             (192 aa)
 initn: 434 init1: 247 opt: 468  Z-score: 488.7  bits: 97.1 E(32554): 6.7e-21
Smith-Waterman score: 468; 47.3% identity (72.3% similar) in 148 aa overlap (35-179:28-168)

           10        20        30        40           50        60 
pF1KE3 LWLLRGLTLGTAPRRAVRGQAGGGGPGTGPGLGEAGSL---ATCELPLAKSEWQKKLTPE
                                     : ...::     .:.. ....: .:.::: 
CCDS89    MSPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPL
                  10        20        30        40        50       

              70        80        90       100       110       120 
pF1KE3 QFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSG
       :..::.:::::  : : : ..:. :.:.:: : .:::.:: :. ::.:::::   : . .
CCDS89 QYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSF---HDVIN
        60        70        80        90       100          110    

             130       140       150       160       170       180 
pF1KE3 SDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRK
       :.    .:    : : :  :.:. :.:: :::::.: ::: :.:.:.::::.::.: :  
CCDS89 SE----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPAD
              120       130       140       150       160       170

                             
pF1KE3 H                     
                             
CCDS89 SSGTAEGGSGVASPAQADKAEL
              180       190  

>>CCDS31853.1 MSRB3 gene_id:253827|Hs108|chr12            (185 aa)
 initn: 434 init1: 247 opt: 466  Z-score: 486.9  bits: 96.7 E(32554): 8.4e-21
Smith-Waterman score: 466; 49.6% identity (74.1% similar) in 135 aa overlap (45-179:34-161)

           20        30        40        50        60        70    
pF1KE3 TAPRRAVRGQAGGGGPGTGPGLGEAGSLATCELPLAKSEWQKKLTPEQFYVTREKGTEPP
                                     :.. ....: .:.::: :..::.:::::  
CCDS31 FNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESA
            10        20        30        40        50        60   

           80        90       100       110       120       130    
pF1KE3 FSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLD
       : : : ..:. :.:.:: : .:::.:: :. ::.:::::   : . .:.    .:    :
CCDS31 FEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSF---HDVINSE----AITFTDD
            70        80        90       100              110      

          140       150       160       170       180              
pF1KE3 TSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH            
        : :  :.:. :.:: :::::.: ::: :.:.:.::::.::.: :               
CCDS31 FSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVAS
        120       130       140       150       160       170      

CCDS31 PAQADKAEL
        180     




182 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:50:41 2016 done: Sat Nov  5 22:50:41 2016
 Total Scan time:  2.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]