Result of FASTA (ccds) for
pFN21AE3690
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3690, 1008 aa
1>>>pF1KE3690 1008 - 1008 aa - 1008 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6534+/-0.00128; mu= 15.7092+/- 0.076
mean_var=156.6643+/-33.832, 0's: 0 Z-trim(104.5): 146 B-trim: 0 in 0/52
Lambda= 0.102468
statistics sampled from 7783 (7931) to 7783 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.244), width: 16
Scan time: 3.130
The best scores are: opt bits E(32554)
CCDS82856.1 HLTF gene_id:6596|Hs108|chr3 (1008) 6698 1003.9 0
CCDS33875.1 HLTF gene_id:6596|Hs108|chr3 (1009) 6686 1002.1 0
CCDS892.1 TTF2 gene_id:8458|Hs108|chr1 (1162) 430 77.3 2e-13
>>CCDS82856.1 HLTF gene_id:6596|Hs108|chr3 (1008 aa)
initn: 6698 init1: 6698 opt: 6698 Z-score: 5363.0 bits: 1003.9 E(32554): 0
Smith-Waterman score: 6698; 99.9% identity (99.9% similar) in 1008 aa overlap (1-1008:1-1008)
10 20 30 40 50 60
pF1KE3 MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTLEMEPAEAIETPL
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS82 NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 SETKGRAKGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SETKGRAKGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLII
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 CPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGTK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 GDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 FLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPER
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 KVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE3 LTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE3 PCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMHA
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE3 LTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE3 AGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFI
910 920 930 940 950 960
970 980 990 1000
pF1KE3 VKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL
970 980 990 1000
>>CCDS33875.1 HLTF gene_id:6596|Hs108|chr3 (1009 aa)
initn: 3846 init1: 3846 opt: 6686 Z-score: 5353.4 bits: 1002.1 E(32554): 0
Smith-Waterman score: 6686; 99.8% identity (99.8% similar) in 1009 aa overlap (1-1008:1-1009)
10 20 30 40 50 60
pF1KE3 MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTLEMEPAEAIETPL
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS33 NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ
370 380 390 400 410 420
430 440 450 460 470
pF1KE3 SETKGRAK-GSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE3 ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE3 KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL
550 560 570 580 590 600
600 610 620 630 640 650
pF1KE3 SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE
610 620 630 640 650 660
660 670 680 690 700 710
pF1KE3 RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY
670 680 690 700 710 720
720 730 740 750 760 770
pF1KE3 LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC
730 740 750 760 770 780
780 790 800 810 820 830
pF1KE3 KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH
790 800 810 820 830 840
840 850 860 870 880 890
pF1KE3 ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT
850 860 870 880 890 900
900 910 920 930 940 950
pF1KE3 EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF
910 920 930 940 950 960
960 970 980 990 1000
pF1KE3 IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL
970 980 990 1000
>>CCDS892.1 TTF2 gene_id:8458|Hs108|chr1 (1162 aa)
initn: 1064 init1: 291 opt: 430 Z-score: 354.5 bits: 77.3 E(32554): 2e-13
Smith-Waterman score: 852; 31.7% identity (60.3% similar) in 590 aa overlap (442-980:608-1137)
420 430 440 450 460 470
pF1KE3 MKGKLKNVQSETKGRAKGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTD-V
:: . . .:: :. . :. .: :
CCDS89 LAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLSKDDSC
580 590 600 610 620 630
480 490 500 510 520 530
pF1KE3 EERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTY
. . :::::: :.. .: .. ....:. .: :.:.::.: . .:: :::.:::
CCDS89 DFTSHGTLIICPASLIHHWKNEVEKRVNSN-KLRVYLYHGPNRDSRARVLSTYDIVITTY
640 650 660 670 680 690
540 550 560 570
pF1KE3 NILTHDYGT--------------KGDS-PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDL
...... : .: : :: : : :.::::.: ..:: .: . :: :
CCDS89 SLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKL
700 710 720 730 740 750
580 590 600 610 620 630
pF1KE3 ESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSL
.. ::..:::::::.: :..:::.::. .:: . . :. .. :.. : .::. :
CCDS89 QACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDN----GSKKGGERLSIL
760 770 780 790 800 810
640 650 660 670 680
pF1KE3 IKNITLRRTKTS-KIKGKPVLELPERKVFIQHITLSDEERKIY-----------QSV--K
:.. ::::: . :.:.. ::.:: ..:. ::..:. .: :: .
CCDS89 TKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSYLKR
820 830 840 850 860 870
690 700 710 720
pF1KE3 NEGRATI-GRYFNE---------GTVLAHYAD-----------VLGLLLRLRQICCHTYL
.:.:.. :: :. :. .... .:. :::::: ::: :
CCDS89 HESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLRLRQCCCHLSL
880 890 900 910 920 930
730 740 750 760 770 780
pF1KE3 LTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCK
: .:.. : ::. . :.:: .:. :..::.
CCDS89 LKSALD---------PMELKGE-----GLVLSL--EEQ----LSALTL------------
940 950 960
790 800 810 820 830 840
pF1KE3 PCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMHA
. ... .: . : . . . .:.: : :.::..:.
CCDS89 ----SELRDSEPSSTVSL-NGTFFKMELFEGMRE----------------STKISSLLAE
970 980 990
850 860 870 880 890 900
pF1KE3 LTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTE
: ..... . ::..:::.:..:... . :: :.... .:::. :.:.. .. :....
CCDS89 LEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSR
1000 1010 1020 1030 1040 1050
910 920 930 940 950 960
pF1KE3 AGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFI
. : .::.:: ::::::::......::.: :::. ::: :: .:.::...:.: .:.
CCDS89 G--PQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFV
1060 1070 1080 1090 1100 1110
970 980 990 1000
pF1KE3 VKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL
. .:::..:..:.::..::
CCDS89 CEGTVEEKILQLQEKKKDLAKQVLSGSGESVTKLTLADLRVLFGI
1120 1130 1140 1150 1160
1008 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 01:56:25 2016 done: Sun Nov 6 01:56:26 2016
Total Scan time: 3.130 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]