Result of FASTA (ccds) for
pFN21AE3681
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3681, 363 aa
1>>>pF1KE3681 363 - 363 aa - 363 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2440+/-0.000822; mu= 17.1279+/- 0.051
mean_var=201.1204+/-43.320, 0's: 0 Z-trim(114.6): 155 B-trim: 0 in 0/51
Lambda= 0.090437
statistics sampled from 14961 (15137) to 14961 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.465), width: 16
Scan time: 3.210
The best scores are: opt bits E(32554)
CCDS56583.1 LHX6 gene_id:26468|Hs108|chr9 ( 363) 2530 342.0 4.8e-94
CCDS6838.2 LHX6 gene_id:26468|Hs108|chr9 ( 392) 2530 342.1 5e-94
CCDS56584.1 LHX6 gene_id:26468|Hs108|chr9 ( 366) 2246 305.0 6.8e-83
CCDS6837.2 LHX6 gene_id:26468|Hs108|chr9 ( 377) 2246 305.0 7e-83
CCDS58008.1 LHX8 gene_id:431707|Hs108|chr1 ( 346) 1361 189.5 3.8e-48
CCDS30756.1 LHX8 gene_id:431707|Hs108|chr1 ( 356) 1361 189.5 3.9e-48
CCDS59144.1 LHX6 gene_id:26468|Hs108|chr9 ( 176) 1208 169.1 2.7e-42
CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 ( 397) 475 73.9 2.6e-13
CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 ( 402) 469 73.2 4.5e-13
CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17 ( 406) 445 70.0 4e-12
CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12 ( 402) 437 69.0 8.1e-12
CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 ( 388) 436 68.8 8.7e-12
CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 ( 397) 436 68.9 8.8e-12
CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 ( 390) 428 67.8 1.8e-11
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 415 66.0 5.5e-11
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 411 65.5 8e-11
>>CCDS56583.1 LHX6 gene_id:26468|Hs108|chr9 (363 aa)
initn: 2530 init1: 2530 opt: 2530 Z-score: 1801.9 bits: 342.0 E(32554): 4.8e-94
Smith-Waterman score: 2530; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSALSDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSALSDD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 IHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNRGEKVIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 IHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNRGEKVIL
310 320 330 340 350 360
pF1KE3 FQY
:::
CCDS56 FQY
>>CCDS6838.2 LHX6 gene_id:26468|Hs108|chr9 (392 aa)
initn: 2530 init1: 2530 opt: 2530 Z-score: 1801.6 bits: 342.1 E(32554): 5e-94
Smith-Waterman score: 2530; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:30-392)
10 20 30
pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEAL
:::::::::::::::::::::::::::::::
CCDS68 MYWKHENAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEAL
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE3 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE3 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVH
310 320 330 340 350 360
340 350 360
pF1KE3 CRLPYTAPPVHLKADMDGPLSNRGEKVILFQY
::::::::::::::::::::::::::::::::
CCDS68 CRLPYTAPPVHLKADMDGPLSNRGEKVILFQY
370 380 390
>>CCDS56584.1 LHX6 gene_id:26468|Hs108|chr9 (366 aa)
initn: 2242 init1: 2242 opt: 2246 Z-score: 1601.6 bits: 305.0 E(32554): 6.8e-83
Smith-Waterman score: 2246; 95.1% identity (96.2% similar) in 346 aa overlap (1-343:19-364)
10 20 30 40
pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQA
::::::::::::::::::::::::::::::::::::::::::
CCDS56 MRRGLCRRSAENPDAGPVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 SPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRT
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 SLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSC
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 KRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRA
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE3 RTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHP
250 260 270 280 290 300
290 300 310 320 330
pF1KE3 VPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQ---VQCGQVHCRLPYTAP
:::::::::::::::::::::::::::::::::::::::::. : . .:: ::
CCDS56 VPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESHPFSVLTLPALPHLPVGAP
310 320 330 340 350 360
340 350 360
pF1KE3 PVHLKADMDGPLSNRGEKVILFQY
. :
CCDS56 QLPLSR
>>CCDS6837.2 LHX6 gene_id:26468|Hs108|chr9 (377 aa)
initn: 2242 init1: 2242 opt: 2246 Z-score: 1601.5 bits: 305.0 E(32554): 7e-83
Smith-Waterman score: 2246; 95.1% identity (96.2% similar) in 346 aa overlap (1-343:30-375)
10 20 30
pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEAL
:::::::::::::::::::::::::::::::
CCDS68 MYWKHENAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEAL
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE3 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR
250 260 270 280 290 300
280 290 300 310 320
pF1KE3 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQ---VQCG
::::::::::::::::::::::::::::::::::::::::::::::::::::. :
CCDS68 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESHPFSVLTL
310 320 330 340 350 360
330 340 350 360
pF1KE3 QVHCRLPYTAPPVHLKADMDGPLSNRGEKVILFQY
. .:: :: . :
CCDS68 PALPHLPVGAPQLPLSR
370
>>CCDS58008.1 LHX8 gene_id:431707|Hs108|chr1 (346 aa)
initn: 1332 init1: 881 opt: 1361 Z-score: 977.8 bits: 189.5 E(32554): 3.8e-48
Smith-Waterman score: 1361; 62.5% identity (82.0% similar) in 323 aa overlap (8-324:5-323)
10 20 30 40 50 60
pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS
: :: : . . .. . :: :.: . : .: .:: :: : ::
CCDS58 MSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDED--SCSSSAPLSPS-SSPRSMAS
10 20 30 40 50
70 80 90 100 110
pF1KE3 -SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFC
: :: .:.::::::.:.::::::.: :::::: :::::::: ...:::::.:.:::
CCDS58 GSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 KMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKV
:.::: :.::.:.::::.:...::::::.::.:::::::::::::::::::::.::::::
CCDS58 KLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 LCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPAKRARTSFTAEQLQVMQAQF
:::.::: :..:::: .:::::...:::. .::: ..:::::::::::::.:::::::::
CCDS58 LCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQF
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 AQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-TPQHP--VPPSGAPPSRLPS
:::::::::::::::. :::::::::::::::::::::: .:.: .: ...:::::
CCDS58 AQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPSRLSP
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE3 ALSDDIHYTPFSSPERARMVT-LHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNR
. ... :. . :. . :.: ::.:....
CCDS58 PMLEEMAYSAYV-PQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT
300 310 320 330 340
>>CCDS30756.1 LHX8 gene_id:431707|Hs108|chr1 (356 aa)
initn: 1332 init1: 881 opt: 1361 Z-score: 977.7 bits: 189.5 E(32554): 3.9e-48
Smith-Waterman score: 1361; 62.5% identity (82.0% similar) in 323 aa overlap (8-324:15-333)
10 20 30 40 50
pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVC
: :: : . . .. . :: :.: . : .: .::
CCDS30 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDED--SCSSSAPLSPS-S
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 SPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYI
:: : :: : :: .:.::::::.:.::::::.: :::::: :::::::: ...::::
CCDS30 SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 KNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEF
:.:.::::.::: :.::.:.::::.:...::::::.::.:::::::::::::::::::::
CCDS30 KDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 GLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPAKRARTSFTAEQL
.:::::::::.::: :..:::: .:::::...:::. .::: ..:::::::::::::.::
CCDS30 ALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQL
180 190 200 210 220 230
240 250 260 270 280
pF1KE3 QVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-TPQHP--VPPSGA
::::::::::::::::::::::. :::::::::::::::::::::: .:.: .: ...
CCDS30 QVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAV
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE3 PPSRLPSALSDDIHYTPFSSPERARMVT-LHGYIESQVQCGQVHCRLPYTAPPVHLKADM
::::: . ... :. . :. . :.: ::.:....
CCDS30 PPSRLSPPMLEEMAYSAYV-PQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT
300 310 320 330 340 350
350 360
pF1KE3 DGPLSNRGEKVILFQY
>>CCDS59144.1 LHX6 gene_id:26468|Hs108|chr9 (176 aa)
initn: 1208 init1: 1208 opt: 1208 Z-score: 872.9 bits: 169.1 E(32554): 2.7e-42
Smith-Waterman score: 1208; 100.0% identity (100.0% similar) in 176 aa overlap (188-363:1-176)
160 170 180 190 200 210
pF1KE3 ACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPK
::::::::::::::::::::::::::::::
CCDS59 MIENLKRAAENGNGLTLEGAVPSEQDSQPK
10 20 30
220 230 240 250 260 270
pF1KE3 PAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH
40 50 60 70 80 90
280 290 300 310 320 330
pF1KE3 TPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYT
100 110 120 130 140 150
340 350 360
pF1KE3 APPVHLKADMDGPLSNRGEKVILFQY
::::::::::::::::::::::::::
CCDS59 APPVHLKADMDGPLSNRGEKVILFQY
160 170
>>CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 (397 aa)
initn: 603 init1: 274 opt: 475 Z-score: 352.5 bits: 73.9 E(32554): 2.6e-13
Smith-Waterman score: 551; 36.8% identity (65.6% similar) in 247 aa overlap (31-276:3-214)
10 20 30 40 50 60
pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS
: .:..:... :.. .::. ...
CCDS69 MLLETGLERDRAR-----PGAAAVCTL-GGTR
10 20
70 80 90 100 110 120
pF1KE3 SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCK
.: .:..: .::::..::. . :: .::.:: :.: : .. :. ... ..::
CCDS69 EIP-----LCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAER--CFSRGESVYCK
30 40 50 60 70
130 140 150 160 170
pF1KE3 MDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KV
:.:.::::::: : : .. ::::. .::: :::: :::::.::.:: :.:. ..
CCDS69 DDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRL
80 90 100 110 120 130
180 190 200 210 220 230
pF1KE3 LCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFA
.:. :.: . : :: ::: ::..::.::..... .
CCDS69 VCKADYETAKQ---REAEA-------------------TAKRPRTTITAKQLETLKSAYN
140 150 160 170
240 250 260 270 280 290
pF1KE3 QDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSALSD
. .: .. ..:.. :::. ::.:::::: ::..:.
CCDS69 TSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGG
180 190 200 210 220 230
300 310 320 330 340 350
pF1KE3 DIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNRGEKVI
CCDS69 SKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSLEH
240 250 260 270 280 290
>>CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 (402 aa)
initn: 603 init1: 274 opt: 469 Z-score: 348.2 bits: 73.2 E(32554): 4.5e-13
Smith-Waterman score: 544; 40.2% identity (67.5% similar) in 209 aa overlap (69-276:35-219)
40 50 60 70 80 90
pF1KE3 EGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECS
.:..: .::::..::. . :: .::.::
CCDS69 GELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKCLKCS
10 20 30 40 50 60
100 110 120 130 140 150
pF1KE3 VCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFA
:.: : .. :. ... ..:: :.:.::::::: : : .. ::::. .::: :::
CCDS69 DCHTPLAER--CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFA
70 80 90 100 110 120
160 170 180 190 200 210
pF1KE3 CFSCKRQLSTGEEFGLVEE-KVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPK
: :::::.::.:: :.:. ...:. :.: .: ::
CCDS69 CVVCKRQLATGDEFYLMEDSRLVCKADYETA---KQREAEA-------------------
130 140 150 160
220 230 240 250 260 270
pF1KE3 PAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH
::: ::..::.::..... . . .: .. ..:.. :::. ::.:::::: ::..:.
CCDS69 TAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRL
170 180 190 200 210 220
280 290 300 310 320 330
pF1KE3 TPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYT
CCDS69 KKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGS
230 240 250 260 270 280
>>CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17 (406 aa)
initn: 538 init1: 250 opt: 445 Z-score: 331.2 bits: 70.0 E(32554): 4e-12
Smith-Waterman score: 542; 38.1% identity (66.1% similar) in 236 aa overlap (70-276:4-237)
40 50 60 70 80 90
pF1KE3 GQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSV
:..: ::::.::.: . :::.:..:
CCDS11 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCE
10 20 30
100 110 120 130 140 150
pF1KE3 CRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC
:. .: .. :. .. ...:: :.: :::::: :.. : :: :::::....:: ::.:
CCDS11 CKCNLTEK--CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTC
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE3 FSCKRQLSTGEEFGLVEE-KVLCRIHY--DTMI--ENLKRAAENGN--GLTLEGAVPS--
. :..:::::::. ...: : .:. : .. . :: ..: .:. .:. .. ::
CCDS11 MMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQD
100 110 120 130 140 150
220 230 240 250
pF1KE3 ------------------EQDSQPKPAKR--ARTSFTAEQLQVMQAQFAQDNNPDAQTLQ
:.:.: ::: ::.. :.::....: :: .: . .
CCDS11 DAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIRE
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE3 KLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPE
.::. :::. ::::::::: :.....
CCDS11 QLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELI
220 230 240 250 260 270
363 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 16:10:11 2016 done: Mon Nov 7 16:10:12 2016
Total Scan time: 3.210 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]