FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3679, 304 aa
  1>>>pF1KE3679 304 - 304 aa - 304 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9589+/-0.00071; mu= 13.7298+/- 0.043
 mean_var=109.9592+/-23.453, 0's: 0 Z-trim(113.1): 92  B-trim: 539 in 1/49
 Lambda= 0.122309
 statistics sampled from 13710 (13814) to 13710 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.424), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS72863.1 RNF115 gene_id:27246|Hs108|chr1        ( 304) 2156 390.6 8.1e-109
CCDS12039.1 RNF126 gene_id:55658|Hs108|chr19       ( 311)  720 137.2 1.6e-32


>>CCDS72863.1 RNF115 gene_id:27246|Hs108|chr1             (304 aa)
 initn: 2156 init1: 2156 opt: 2156  Z-score: 2067.1  bits: 390.6 E(32554): 8.1e-109
Smith-Waterman score: 2156; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KE3 MAEASAAGADSGAAVAAHRFFCHFCKGEVSPKLPEYICPRCESGFIEEVTDDSSFLGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MAEASAAGADSGAAVAAHRFFCHFCKGEVSPKLPEYICPRCESGFIEEVTDDSSFLGGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SRIDNTTTTHFAELWGHLDHTMFFQDFRPFLSSSPLDQDNRANERGHQTHTDFWGARPPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SRIDNTTTTHFAELWGHLDHTMFFQDFRPFLSSSPLDQDNRANERGHQTHTDFWGARPPR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LPLGRRYRSRGSSRPDRSPAIEGILQHIFAGFFANSAIPGSPHPFSWSGMLHSNPGDYAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LPLGRRYRSRGSSRPDRSPAIEGILQHIFAGFFANSAIPGSPHPFSWSGMLHSNPGDYAW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 GQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 VRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTEASASNRFSNDSQLHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTEASASNRFSNDSQLHD
              250       260       270       280       290       300

           
pF1KE3 RWTF
       ::::
CCDS72 RWTF
           

>>CCDS12039.1 RNF126 gene_id:55658|Hs108|chr19            (311 aa)
 initn: 832 init1: 605 opt: 720  Z-score: 697.6  bits: 137.2 E(32554): 1.6e-32
Smith-Waterman score: 875; 47.1% identity (69.0% similar) in 306 aa overlap (19-296:10-306)

               10        20        30        40        50        60
pF1KE3 MAEASAAGADSGAAVAAHRFFCHFCKGEVSPKLPEYICPRCESGFIEEVTDDSSFLGGGG
                         :.::: :. :. :.::.:::::::::::::. ...    .:.
CCDS12          MAEASPHPGRYFCHCCSVEIVPRLPDYICPRCESGFIEELPEETRSTENGS
                        10        20        30        40        50 

               70        80                       90       100     
pF1KE3 SRIDNTTTTHFAELWGHLDHTMF-------------FQD-FR-PFLSSSPLDQDNRA---
       .     :      :  :.:. .:             :.: :. : .  .   .:.:    
CCDS12 APSTAPTDQSRPPLE-HVDQHLFTLPQGYGQFAFGIFDDSFEIPTFPPGAQADDGRDPES
              60         70        80        90       100       110

             110       120       130       140       150       160 
pF1KE3 -NERGHQTHTDFWGARPPRLPLGRRYRSRGSSRPDRSPAIEGILQHIFAGFFANSAIPGS
         :: : ..  . ::: ::  :  :   :...: .  :..:::.:..  :... ..:: :
CCDS12 RRERDHPSRHRY-GARQPRARLTTR---RATGRHEGVPTLEGIIQQLVNGIITPATIP-S
              120        130          140       150       160      

             170       180       190       200       210       220 
pF1KE3 PHPFSWSGMLHSNPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQ
         :  : :.::::: ::::: .:::::.::::.:.::::::::::::: .:::: ::.:.
CCDS12 LGP--W-GVLHSNPMDYAWGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEH
            170       180       190       200       210       220  

             230       240       250       260       270       280 
pF1KE3 VDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQ-
       :  ::::::::.::.. :.::::::::.::..::::::: ::.::::::::.:.... . 
CCDS12 VGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNP
            230       240       250       260       270       280  

                      290       300    
pF1KE3 --------SQSTEASASNRFSNDSQLHDRWTF
               :.:. .:.:.  ::..        
CCDS12 PGLTGVSFSSSSSSSSSSSPSNENATSNS   
            290       300       310    




304 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:57:09 2016 done: Sun Nov  6 18:57:09 2016
 Total Scan time:  2.460 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]