Result of FASTA (omim) for
pFN21AE3678
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3678, 317 aa
1>>>pF1KE3678 317 - 317 aa - 317 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3099+/-0.00034; mu= 8.9981+/- 0.021
mean_var=177.9123+/-36.310, 0's: 0 Z-trim(121.2): 102 B-trim: 634 in 1/56
Lambda= 0.096155
statistics sampled from 37418 (37528) to 37418 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.44), width: 16
Scan time: 8.340
The best scores are: opt bits E(85289)
NP_006330 (OMIM: 605535) SWI/SNF-related matrix-as ( 317) 2100 302.9 5.8e-82
XP_016881633 (OMIM: 605535) PREDICTED: SWI/SNF-rel ( 316) 2082 300.4 3.3e-81
XP_011519460 (OMIM: 605534) PREDICTED: high mobili ( 347) 984 148.1 2.5e-35
NP_060670 (OMIM: 605534) high mobility group prote ( 347) 984 148.1 2.5e-35
NP_001291433 (OMIM: 605534) high mobility group pr ( 347) 984 148.1 2.5e-35
NP_001291434 (OMIM: 605534) high mobility group pr ( 234) 826 126.0 7.4e-29
XP_011521304 (OMIM: 611416) PREDICTED: TOX high mo ( 553) 247 46.0 0.00021
NP_001139660 (OMIM: 611416) TOX high mobility grou ( 571) 247 46.1 0.00021
XP_016878631 (OMIM: 611416) PREDICTED: TOX high mo ( 572) 247 46.1 0.00021
XP_005255949 (OMIM: 611416) PREDICTED: TOX high mo ( 575) 247 46.1 0.00021
NP_001073899 (OMIM: 611416) TOX high mobility grou ( 576) 247 46.1 0.00021
NP_001288158 (OMIM: 300193,300915) high mobility g ( 200) 234 43.8 0.00035
NP_005333 (OMIM: 300193,300915) high mobility grou ( 200) 234 43.8 0.00035
NP_001288157 (OMIM: 300193,300915) high mobility g ( 200) 234 43.8 0.00035
NP_001288160 (OMIM: 300193,300915) high mobility g ( 220) 234 43.9 0.00038
XP_016869574 (OMIM: 606863) PREDICTED: thymocyte s ( 504) 239 44.9 0.00042
NP_055544 (OMIM: 606863) thymocyte selection-assoc ( 526) 239 44.9 0.00043
NP_002119 (OMIM: 163905) high mobility group prote ( 215) 231 43.4 0.00049
NP_001300821 (OMIM: 163905) high mobility group pr ( 215) 231 43.4 0.00049
NP_001300822 (OMIM: 163905) high mobility group pr ( 215) 231 43.4 0.00049
NP_002120 (OMIM: 163906) high mobility group prote ( 209) 222 42.2 0.0011
NP_001124160 (OMIM: 163906) high mobility group pr ( 209) 222 42.2 0.0011
NP_001124161 (OMIM: 163906) high mobility group pr ( 209) 222 42.2 0.0011
NP_003104 (OMIM: 604585) nuclear autoantigen Sp-10 ( 879) 225 43.2 0.0024
NP_001092266 (OMIM: 611163) TOX high mobility grou ( 464) 216 41.7 0.0036
NP_116272 (OMIM: 611163) TOX high mobility group b ( 464) 216 41.7 0.0036
NP_001092267 (OMIM: 611163) TOX high mobility grou ( 506) 216 41.7 0.0038
XP_006723947 (OMIM: 611163) PREDICTED: TOX high mo ( 515) 216 41.7 0.0038
NP_001290452 (OMIM: 614032) TOX high mobility grou ( 598) 216 41.8 0.0043
NP_055643 (OMIM: 614032) TOX high mobility group b ( 621) 216 41.8 0.0044
NP_003070 (OMIM: 603111,607174,616938) SWI/SNF-rel ( 411) 206 40.2 0.0086
>>NP_006330 (OMIM: 605535) SWI/SNF-related matrix-associ (317 aa)
initn: 2100 init1: 2100 opt: 2100 Z-score: 1592.5 bits: 302.9 E(85289): 5.8e-82
Smith-Waterman score: 2100; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KE3 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEK
250 260 270 280 290 300
310
pF1KE3 LIVRIKEILAQVASEHL
:::::::::::::::::
NP_006 LIVRIKEILAQVASEHL
310
>>XP_016881633 (OMIM: 605535) PREDICTED: SWI/SNF-related (316 aa)
initn: 1093 init1: 1093 opt: 2082 Z-score: 1579.0 bits: 300.4 E(85289): 3.3e-81
Smith-Waterman score: 2082; 99.7% identity (99.7% similar) in 317 aa overlap (1-317:1-316)
10 20 30 40 50 60
pF1KE3 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGF
::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
XP_016 DEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKK-DSSSGLMNTLLNGHKGGDCDGF
130 140 150 160 170
190 200 210 220 230 240
pF1KE3 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE3 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEK
240 250 260 270 280 290
310
pF1KE3 LIVRIKEILAQVASEHL
:::::::::::::::::
XP_016 LIVRIKEILAQVASEHL
300 310
>>XP_011519460 (OMIM: 605534) PREDICTED: high mobility g (347 aa)
initn: 932 init1: 858 opt: 984 Z-score: 755.3 bits: 148.1 E(85289): 2.5e-35
Smith-Waterman score: 984; 48.4% identity (77.8% similar) in 320 aa overlap (1-312:31-345)
10 20 30
pF1KE3 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTV
..: :. : ...: .. . : :: .
XP_011 MENLMTSSTLPPLFADEDGSKESNDLATTGLNH-PEVPYSSGATSSTNNP----EFVEDL
10 20 30 40 50
40 50 60 70 80
pF1KE3 KQER---GEGPRA--GEKGSHEEEPVKKRG-WPKGKKRKKIL--PNGPKAPVTGYVRFLN
.: . .:. : :.. ::.: .::: : ::.:::: : :.::.:.::::::.:
XP_011 SQGQLLQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMN
60 70 80 90 100 110
90 100 110 120 130 140
pF1KE3 ERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEA
:::::.:...:..::::::.::: ::::: : :::::::::.:.:..:::::. ::..::
XP_011 ERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEA
120 130 140 150 160 170
150 160 170 180 190 200
pF1KE3 YKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAE
::. ..: :... : ... .. . .: . :.::.::::::::...::::::
XP_011 YKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAE
180 190 200 210 220 230
210 220 230 240 250 260
pF1KE3 LRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTAS
::.::: :. :::.::.::.:..:: .: :.:: .. :. :. .:::.:...::.::.:
XP_011 LRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSS
240 250 260 270 280 290
270 280 290 300 310
pF1KE3 FASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL
:::.:.::.:::::. :.: :: :::. : .: ..:..:. ..:.. ..
XP_011 FASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
300 310 320 330 340
>>NP_060670 (OMIM: 605534) high mobility group protein 2 (347 aa)
initn: 932 init1: 858 opt: 984 Z-score: 755.3 bits: 148.1 E(85289): 2.5e-35
Smith-Waterman score: 984; 48.4% identity (77.8% similar) in 320 aa overlap (1-312:31-345)
10 20 30
pF1KE3 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTV
..: :. : ...: .. . : :: .
NP_060 MENLMTSSTLPPLFADEDGSKESNDLATTGLNH-PEVPYSSGATSSTNNP----EFVEDL
10 20 30 40 50
40 50 60 70 80
pF1KE3 KQER---GEGPRA--GEKGSHEEEPVKKRG-WPKGKKRKKIL--PNGPKAPVTGYVRFLN
.: . .:. : :.. ::.: .::: : ::.:::: : :.::.:.::::::.:
NP_060 SQGQLLQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMN
60 70 80 90 100 110
90 100 110 120 130 140
pF1KE3 ERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEA
:::::.:...:..::::::.::: ::::: : :::::::::.:.:..:::::. ::..::
NP_060 ERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEA
120 130 140 150 160 170
150 160 170 180 190 200
pF1KE3 YKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAE
::. ..: :... : ... .. . .: . :.::.::::::::...::::::
NP_060 YKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAE
180 190 200 210 220 230
210 220 230 240 250 260
pF1KE3 LRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTAS
::.::: :. :::.::.::.:..:: .: :.:: .. :. :. .:::.:...::.::.:
NP_060 LRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSS
240 250 260 270 280 290
270 280 290 300 310
pF1KE3 FASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL
:::.:.::.:::::. :.: :: :::. : .: ..:..:. ..:.. ..
NP_060 FASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
300 310 320 330 340
>>NP_001291433 (OMIM: 605534) high mobility group protei (347 aa)
initn: 932 init1: 858 opt: 984 Z-score: 755.3 bits: 148.1 E(85289): 2.5e-35
Smith-Waterman score: 984; 48.4% identity (77.8% similar) in 320 aa overlap (1-312:31-345)
10 20 30
pF1KE3 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTV
..: :. : ...: .. . : :: .
NP_001 MENLMTSSTLPPLFADEDGSKESNDLATTGLNH-PEVPYSSGATSSTNNP----EFVEDL
10 20 30 40 50
40 50 60 70 80
pF1KE3 KQER---GEGPRA--GEKGSHEEEPVKKRG-WPKGKKRKKIL--PNGPKAPVTGYVRFLN
.: . .:. : :.. ::.: .::: : ::.:::: : :.::.:.::::::.:
NP_001 SQGQLLQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMN
60 70 80 90 100 110
90 100 110 120 130 140
pF1KE3 ERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEA
:::::.:...:..::::::.::: ::::: : :::::::::.:.:..:::::. ::..::
NP_001 ERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEA
120 130 140 150 160 170
150 160 170 180 190 200
pF1KE3 YKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAE
::. ..: :... : ... .. . .: . :.::.::::::::...::::::
NP_001 YKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAE
180 190 200 210 220 230
210 220 230 240 250 260
pF1KE3 LRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTAS
::.::: :. :::.::.::.:..:: .: :.:: .. :. :. .:::.:...::.::.:
NP_001 LRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSS
240 250 260 270 280 290
270 280 290 300 310
pF1KE3 FASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL
:::.:.::.:::::. :.: :: :::. : .: ..:..:. ..:.. ..
NP_001 FASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
300 310 320 330 340
>>NP_001291434 (OMIM: 605534) high mobility group protei (234 aa)
initn: 808 init1: 786 opt: 826 Z-score: 639.0 bits: 126.0 E(85289): 7.4e-29
Smith-Waterman score: 826; 51.7% identity (82.8% similar) in 232 aa overlap (81-312:1-232)
60 70 80 90 100 110
pF1KE3 VKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSK
.::::::.:...:..::::::.::: ::::
NP_001 MNERREQLRAKRPEVPFPEITRMLGNEWSK
10 20 30
120 130 140 150 160 170
pF1KE3 LQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLN
: : :::::::::.:.:..:::::. ::..::::. ..: :... : ... .. .
NP_001 LPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHD
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE3 GHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSA
.: . :.::.::::::::...::::::::.::: :. :::.::.::.:..:: .:
NP_001 HEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTA
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE3 RERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGA
:.:: .. :. :. .:::.:...::.::.::::.:.::.:::::. :.: :: :::.
NP_001 VEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSI
160 170 180 190 200 210
300 310
pF1KE3 IERDPAQHEKLIVRIKEILAQVASEHL
: .: ..:..:. ..:.. ..
NP_001 ILANPQDNENFIATVREVVNRLDR
220 230
>>XP_011521304 (OMIM: 611416) PREDICTED: TOX high mobili (553 aa)
initn: 238 init1: 214 opt: 247 Z-score: 200.2 bits: 46.0 E(85289): 0.00021
Smith-Waterman score: 247; 29.2% identity (60.1% similar) in 178 aa overlap (4-172:169-342)
10 20 30
pF1KE3 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQE
: ..: .. .: ..:. . .. ...
XP_011 DAARSGVMPPAQLTTINQSQLSAQLGLNLGGASMPHTSPSPPASKSATPSPSSSIN-EED
140 150 160 170 180 190
40 50 60 70 80 90
pF1KE3 RGEGPRA-GEKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRH
:. :: ::: . . :: :: ::.: :: :. ::..:. :. . . :. ..
XP_011 ADEANRAIGEKRAAPDSG-KKPKTPKKKKKKD--PNEPQKPVSAYALFFRDTQAAIKGQN
200 210 220 230 240 250
100 110 120 130 140 150
pF1KE3 PDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQE
:. : :..:.... :..: .:: : ..: :..:.: : ::. : . : .:. .
XP_011 PNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRASLVSKAAAESAEA
260 270 280 290 300 310
160 170 180 190 200
pF1KE3 KKIKKED--------SSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELR
. :.. . .:: :.:: :. :
XP_011 QTIRSVQQTLASTNLTSSLLLNTPLSQHGTVSASPQTLQQSLPRSIAPKPLTMRLPMNQI
320 330 340 350 360 370
>>NP_001139660 (OMIM: 611416) TOX high mobility group bo (571 aa)
initn: 238 init1: 214 opt: 247 Z-score: 200.0 bits: 46.1 E(85289): 0.00021
Smith-Waterman score: 247; 29.2% identity (60.1% similar) in 178 aa overlap (4-172:187-360)
10 20 30
pF1KE3 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQE
: ..: .. .: ..:. . .. ...
NP_001 DAARSGVMPPAQLTTINQSQLSAQLGLNLGGASMPHTSPSPPASKSATPSPSSSIN-EED
160 170 180 190 200 210
40 50 60 70 80 90
pF1KE3 RGEGPRA-GEKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRH
:. :: ::: . . :: :: ::.: :: :. ::..:. :. . . :. ..
NP_001 ADEANRAIGEKRAAPDSG-KKPKTPKKKKKKD--PNEPQKPVSAYALFFRDTQAAIKGQN
220 230 240 250 260 270
100 110 120 130 140 150
pF1KE3 PDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQE
:. : :..:.... :..: .:: : ..: :..:.: : ::. : . : .:. .
NP_001 PNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRASLVSKAAAESAEA
280 290 300 310 320 330
160 170 180 190 200
pF1KE3 KKIKKED--------SSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELR
. :.. . .:: :.:: :. :
NP_001 QTIRSVQQTLASTNLTSSLLLNTPLSQHGTVSASPQTLQQSLPRSIAPKPLTMRLPMNQI
340 350 360 370 380 390
>>XP_016878631 (OMIM: 611416) PREDICTED: TOX high mobili (572 aa)
initn: 238 init1: 214 opt: 247 Z-score: 200.0 bits: 46.1 E(85289): 0.00021
Smith-Waterman score: 247; 29.2% identity (60.1% similar) in 178 aa overlap (4-172:188-361)
10 20 30
pF1KE3 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQE
: ..: .. .: ..:. . .. ...
XP_016 DAARSGVMPPAQLTTINQSQLSAQLGLNLGGASMPHTSPSPPASKSATPSPSSSIN-EED
160 170 180 190 200 210
40 50 60 70 80 90
pF1KE3 RGEGPRA-GEKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRH
:. :: ::: . . :: :: ::.: :: :. ::..:. :. . . :. ..
XP_016 ADEANRAIGEKRAAPDSG-KKPKTPKKKKKKD--PNEPQKPVSAYALFFRDTQAAIKGQN
220 230 240 250 260 270
100 110 120 130 140 150
pF1KE3 PDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQE
:. : :..:.... :..: .:: : ..: :..:.: : ::. : . : .:. .
XP_016 PNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRASLVSKAAAESAEA
280 290 300 310 320 330
160 170 180 190 200
pF1KE3 KKIKKED--------SSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELR
. :.. . .:: :.:: :. :
XP_016 QTIRSVQQTLASTNLTSSLLLNTPLSQHGTVSASPQTLQQSLPRSIAPKPLTMRLPMNQI
340 350 360 370 380 390
>>XP_005255949 (OMIM: 611416) PREDICTED: TOX high mobili (575 aa)
initn: 238 init1: 214 opt: 247 Z-score: 200.0 bits: 46.1 E(85289): 0.00021
Smith-Waterman score: 247; 29.2% identity (60.1% similar) in 178 aa overlap (4-172:191-364)
10 20 30
pF1KE3 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQE
: ..: .. .: ..:. . .. ...
XP_005 DAARSGVMPPAQLTTINQSQLSAQLGLNLGGASMPHTSPSPPASKSATPSPSSSIN-EED
170 180 190 200 210
40 50 60 70 80 90
pF1KE3 RGEGPRA-GEKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRH
:. :: ::: . . :: :: ::.: :: :. ::..:. :. . . :. ..
XP_005 ADEANRAIGEKRAAPDSG-KKPKTPKKKKKKD--PNEPQKPVSAYALFFRDTQAAIKGQN
220 230 240 250 260 270
100 110 120 130 140 150
pF1KE3 PDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQE
:. : :..:.... :..: .:: : ..: :..:.: : ::. : . : .:. .
XP_005 PNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRASLVSKAAAESAEA
280 290 300 310 320 330
160 170 180 190 200
pF1KE3 KKIKKED--------SSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELR
. :.. . .:: :.:: :. :
XP_005 QTIRSVQQTLASTNLTSSLLLNTPLSQHGTVSASPQTLQQSLPRSIAPKPLTMRLPMNQI
340 350 360 370 380 390
317 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 10:37:15 2016 done: Sun Nov 6 10:37:16 2016
Total Scan time: 8.340 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]