Result of FASTA (ccds) for
pFN21AE3675
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3675, 366 aa
1>>>pF1KE3675 366 - 366 aa - 366 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7928+/-0.00101; mu= 14.3091+/- 0.060
mean_var=78.9211+/-15.395, 0's: 0 Z-trim(105.2): 104 B-trim: 0 in 0/52
Lambda= 0.144370
statistics sampled from 8201 (8313) to 8201 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.255), width: 16
Scan time: 2.480
The best scores are: opt bits E(32554)
CCDS47053.1 USP46 gene_id:64854|Hs108|chr4 ( 366) 2454 520.9 7e-148
CCDS47054.1 USP46 gene_id:64854|Hs108|chr4 ( 359) 2385 506.5 1.5e-143
CCDS31952.1 USP12 gene_id:219333|Hs108|chr13 ( 370) 2201 468.2 5.2e-132
CCDS61632.1 USP8 gene_id:9101|Hs108|chr15 (1012) 414 96.2 1.3e-19
CCDS10137.1 USP8 gene_id:9101|Hs108|chr15 (1118) 414 96.2 1.4e-19
CCDS53944.1 USP50 gene_id:373509|Hs108|chr15 ( 334) 340 80.5 2.3e-15
CCDS44084.1 USP48 gene_id:84196|Hs108|chr1 ( 485) 321 76.7 4.9e-14
CCDS81277.1 USP48 gene_id:84196|Hs108|chr1 ( 983) 321 76.8 8.8e-14
CCDS30623.1 USP48 gene_id:84196|Hs108|chr1 (1035) 321 76.8 9.1e-14
CCDS2418.1 USP37 gene_id:57695|Hs108|chr2 ( 979) 316 75.8 1.8e-13
CCDS77901.1 USP17L15 gene_id:100288520|Hs108|chr4 ( 559) 312 74.8 2e-13
CCDS32755.1 USP36 gene_id:57602|Hs108|chr17 (1123) 316 75.8 2e-13
CCDS59459.1 USP17L18 gene_id:100287364|Hs108|chr4 ( 530) 301 72.5 9.4e-13
CCDS59455.1 USP17L11 gene_id:100287178|Hs108|chr4 ( 530) 301 72.5 9.4e-13
CCDS59460.1 USP17L19 gene_id:100287404|Hs108|chr4 ( 530) 301 72.5 9.4e-13
CCDS43713.1 USP17L2 gene_id:377630|Hs108|chr8 ( 530) 301 72.5 9.4e-13
CCDS59467.1 USP17L5 gene_id:728386|Hs108|chr4 ( 530) 301 72.5 9.4e-13
CCDS47535.1 USP42 gene_id:84132|Hs108|chr7 (1316) 305 73.6 1.1e-12
CCDS59463.1 USP17L22 gene_id:100287513|Hs108|chr4 ( 530) 299 72.1 1.3e-12
CCDS59458.1 USP17L17 gene_id:100287327|Hs108|chr4 ( 530) 299 72.1 1.3e-12
CCDS59471.1 USP17L30 gene_id:728419|Hs108|chr4 ( 530) 298 71.9 1.4e-12
CCDS59470.1 USP17L29 gene_id:728405|Hs108|chr4 ( 530) 298 71.9 1.4e-12
CCDS59466.1 USP17L26 gene_id:728379|Hs108|chr4 ( 530) 298 71.9 1.4e-12
CCDS59461.1 USP17L20 gene_id:100287441|Hs108|chr4 ( 530) 298 71.9 1.4e-12
CCDS59465.1 USP17L25 gene_id:728373|Hs108|chr4 ( 530) 298 71.9 1.4e-12
CCDS59469.1 USP17L28 gene_id:728400|Hs108|chr4 ( 530) 298 71.9 1.4e-12
CCDS59464.1 USP17L24 gene_id:728369|Hs108|chr4 ( 530) 298 71.9 1.4e-12
CCDS59468.1 USP17L27 gene_id:728393|Hs108|chr4 ( 530) 298 71.9 1.4e-12
CCDS58370.1 USP3 gene_id:9960|Hs108|chr15 ( 476) 296 71.4 1.8e-12
CCDS32265.1 USP3 gene_id:9960|Hs108|chr15 ( 520) 296 71.5 1.9e-12
CCDS59457.1 USP17L13 gene_id:100287238|Hs108|chr4 ( 530) 296 71.5 1.9e-12
CCDS78301.1 USP17L3 gene_id:645836|Hs108|chr8 ( 530) 295 71.3 2.2e-12
CCDS59456.1 USP17L12 gene_id:100287205|Hs108|chr4 ( 530) 294 71.1 2.6e-12
CCDS59454.1 USP17L10 gene_id:100287144|Hs108|chr4 ( 530) 294 71.1 2.6e-12
CCDS59462.1 USP17L21 gene_id:100287478|Hs108|chr4 ( 530) 294 71.1 2.6e-12
CCDS58189.1 USP2 gene_id:9099|Hs108|chr11 ( 362) 286 69.3 5.9e-12
CCDS78298.1 USP17L1 gene_id:401447|Hs108|chr8 ( 530) 288 69.8 6.1e-12
CCDS8423.1 USP2 gene_id:9099|Hs108|chr11 ( 396) 286 69.3 6.4e-12
CCDS78299.1 USP17L4 gene_id:645402|Hs108|chr8 ( 530) 287 69.6 7.1e-12
CCDS8422.1 USP2 gene_id:9099|Hs108|chr11 ( 605) 286 69.4 9.1e-12
CCDS46547.1 USP40 gene_id:55230|Hs108|chr2 (1247) 288 70.0 1.3e-11
CCDS78300.1 USP17L8 gene_id:392188|Hs108|chr8 ( 530) 280 68.1 1.9e-11
CCDS66941.1 USP7 gene_id:7874|Hs108|chr16 (1086) 282 68.7 2.7e-11
CCDS32385.1 USP7 gene_id:7874|Hs108|chr16 (1102) 282 68.7 2.7e-11
>>CCDS47053.1 USP46 gene_id:64854|Hs108|chr4 (366 aa)
initn: 2454 init1: 2454 opt: 2454 Z-score: 2768.4 bits: 520.9 E(32554): 7e-148
Smith-Waterman score: 2454; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)
10 20 30 40 50 60
pF1KE3 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL
310 320 330 340 350 360
pF1KE3 FYQSRE
::::::
CCDS47 FYQSRE
>>CCDS47054.1 USP46 gene_id:64854|Hs108|chr4 (359 aa)
initn: 2385 init1: 2385 opt: 2385 Z-score: 2690.8 bits: 506.5 E(32554): 1.5e-143
Smith-Waterman score: 2385; 99.4% identity (99.7% similar) in 357 aa overlap (10-366:3-359)
10 20 30 40 50 60
pF1KE3 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR
: .::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MNCFQGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE3 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE3 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL
300 310 320 330 340 350
pF1KE3 FYQSRE
::::::
CCDS47 FYQSRE
>>CCDS31952.1 USP12 gene_id:219333|Hs108|chr13 (370 aa)
initn: 2253 init1: 2201 opt: 2201 Z-score: 2483.5 bits: 468.2 E(32554): 5.2e-132
Smith-Waterman score: 2201; 88.5% identity (96.4% similar) in 366 aa overlap (1-366:5-370)
10 20 30 40 50
pF1KE3 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFC
::: ..::::.::.:::::::.:::::::.::::::::::::::::::::::::::
CCDS31 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 RPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNY
:::::.:::::.: .:::.::::::::::::::::::::::::::::.::::::.:::::
CCDS31 RPFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 MQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTL
:::::::::::::::::::::::.:::::::.: :::... .:. :. :::::::::::
CCDS31 MQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVHEIFQGTL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 TNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ
:::::::.:::.::::::::::::::::::::::::: :::::::::: ::::: : :::
CCDS31 TNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE3 EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMY
::.:::.::::::::::::::::::.::::::::::::::::::::::::.::.: ::::
CCDS31 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 DLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
:::::::::::::::::::.::::: ::::::::::::::::::::::::::::::::::
CCDS31 DLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
310 320 330 340 350 360
360
pF1KE3 GYILFYQSRE
:::::::::.
CCDS31 GYILFYQSRD
370
>>CCDS61632.1 USP8 gene_id:9101|Hs108|chr15 (1012 aa)
initn: 320 init1: 166 opt: 414 Z-score: 465.4 bits: 96.2 E(32554): 1.3e-19
Smith-Waterman score: 464; 31.9% identity (57.5% similar) in 348 aa overlap (36-364:672-1002)
10 20 30 40 50 60
pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCR-PFRENVL
:: :.::::: ::.:: : : : . .
CCDS61 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCL--CNAPHLADYF
650 660 670 680 690
70 80 90 100 110
pF1KE3 AYKAQQK--KKENLLTC---LADLFHSI--ATQKKKVGVIPPKKFISRLRKENDLFDNYM
. : .. ::: .:. : : : . : :: : . : :: : .:
CCDS61 NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYS
700 710 720 730 740 750
120 130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQE----EKKQEKQNGKLKNGNMNEPAENNKPEL--TWVHEI
:::..:.: .:.. . . :.. .. .:..: .: . . : : ... .: . . .
CCDS61 QQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL
760 770 780 790 800 810
180 190 200 210 220
pF1KE3 FQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSIT--HCLRDFSNTETLCSEQKYYC
::: . . ..::.:. : : :. ::. . .... : ::: ::. : : .....::
CCDS61 FQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYC
820 830 840 850 860 870
230 240 250 260 270 280
pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLE-LRLFNTSSD
: ..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
CCDS61 SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQYVIG
880 890 900 910 920 930
290 300 310 320 330 340
pF1KE3 AVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGF--WLLFDDDIVEKIDAQAIEEFYGL
: . :.: .: : : : . ::: . :. . :. ::: : :......
CCDS61 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-----
940 950 960 970 980 990
350 360
pF1KE3 TSDISKNSESGYILFYQSRE
: ..::::: :
CCDS61 -------SSAAYILFYTSLGPRVTDVAT
1000 1010
>>CCDS10137.1 USP8 gene_id:9101|Hs108|chr15 (1118 aa)
initn: 320 init1: 166 opt: 414 Z-score: 464.8 bits: 96.2 E(32554): 1.4e-19
Smith-Waterman score: 464; 31.9% identity (57.5% similar) in 348 aa overlap (36-364:778-1108)
10 20 30 40 50 60
pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCR-PFRENVL
:: :.::::: ::.:: : : : . .
CCDS10 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCL--CNAPHLADYF
750 760 770 780 790 800
70 80 90 100 110
pF1KE3 AYKAQQK--KKENLLTC---LADLFHSI--ATQKKKVGVIPPKKFISRLRKENDLFDNYM
. : .. ::: .:. : : : . : :: : . : :: : .:
CCDS10 NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYS
810 820 830 840 850 860
120 130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQE----EKKQEKQNGKLKNGNMNEPAENNKPEL--TWVHEI
:::..:.: .:.. . . :.. .. .:..: .: . . : : ... .: . . .
CCDS10 QQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL
870 880 890 900 910 920
180 190 200 210 220
pF1KE3 FQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSIT--HCLRDFSNTETLCSEQKYYC
::: . . ..::.:. : : :. ::. . .... : ::: ::. : : .....::
CCDS10 FQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYC
930 940 950 960 970 980
230 240 250 260 270 280
pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLE-LRLFNTSSD
: ..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
CCDS10 SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQYVIG
990 1000 1010 1020 1030 1040
290 300 310 320 330 340
pF1KE3 AVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGF--WLLFDDDIVEKIDAQAIEEFYGL
: . :.: .: : : : . ::: . :. . :. ::: : :......
CCDS10 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-----
1050 1060 1070 1080 1090
350 360
pF1KE3 TSDISKNSESGYILFYQSRE
: ..::::: :
CCDS10 -------SSAAYILFYTSLGPRVTDVAT
1100 1110
>>CCDS53944.1 USP50 gene_id:373509|Hs108|chr15 (334 aa)
initn: 282 init1: 134 opt: 340 Z-score: 389.4 bits: 80.5 E(32554): 2.3e-15
Smith-Waterman score: 340; 28.9% identity (55.0% similar) in 291 aa overlap (36-320:45-329)
10 20 30 40 50 60
pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFRENVLA
:: :.:::: :.. : : :. : :.
CCDS53 YHVLAECTDYYDTLPVKEADGNQPHFQGVTGLWNLGNTCCVNAISQCLCSILPLVEYFLT
20 30 40 50 60 70
70 80 90 100 110 120
pF1KE3 YK---AQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQDAH
: : :. .. : .: :. .. . . :. : : : . : . :::::.
CCDS53 GKYITALQNDCSEVATAFAYLMTDMWLGDSDC--VSPEIFWSALGNLYPAFTKKMQQDAQ
80 90 100 110 120 130
130 140 150 160 170 180
pF1KE3 EFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRC
::: .:: . . :.. . ..... . :.... . : . . ..:. :. :
CCDS53 EFLICVLNELHEALKKYHYSRRRSYE-KGSTQRCCRKWITTETSIITQLFEEQLNYSIVC
140 150 160 170 180 190
190 200 210 220 230 240
pF1KE3 LNCETVSSKDEDF--LDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK
:.:: . :.: : ..: . . . :. ::. : . ..: ... .: : .:::.
CCDS53 LKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDALTWNNEIHCSFCETKQETAV
200 210 220 230 240 250
250 260 270 280 290
pF1KE3 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPL-ELRLFNTSSDAVNLDRMYDLV
: ..: : :. .::::: . .: :: . .:: .: : . :.:
CCDS53 RASISKAPKIIIFHLKRFDIQGTTKR--KLRTDIHYPLTNLDLTPYICSIFRKYPKYNLC
260 270 280 290 300
300 310 320 330 340 350
pF1KE3 AVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYI
::: : :. . ::: .. :.
CCDS53 AVVNHFGDL-DGGHYTAFCKNSVTQA
310 320 330
>>CCDS44084.1 USP48 gene_id:84196|Hs108|chr1 (485 aa)
initn: 298 init1: 119 opt: 321 Z-score: 365.5 bits: 76.7 E(32554): 4.9e-14
Smith-Waterman score: 410; 27.7% identity (55.8% similar) in 339 aa overlap (34-356:88-396)
10 20 30 40 50
pF1KE3 RNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQ----------AL
. ::.:.: ::: :. :: ::
CCDS44 IGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQAL
60 70 80 90 100 110
60 70 80 90 100
pF1KE3 YFC-RPFRENVLAYKAQQKKK-ENLLTC--LADLFHSIATQKKKVGVIPPKKFISRLRKE
:.: . .:. :..: : : : :: . ..... : :. :.. :
CCDS44 YLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQNSNRR--YIDPSGFVKALG--
120 130 140 150 160 170
110 120 130 140 150 160
pF1KE3 NDLFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVH
.:. .::::.:: . ... . : :...:. . .: :.
CCDS44 ---LDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRN--------------------IVQ
180 190 200 210
170 180 190 200 210 220
pF1KE3 EIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYC
. : : . : : .: :. : .: .... . ..: :. .: . : : ....:.:
CCDS44 QQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFC
220 230 240 250 260 270
230 240 250 260 270 280
pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDA
:.: :::.: ...:. .:: : :.: :: . .: . ::. . : :. .. .
CCDS44 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFS-EILDMEPYVEH
280 290 300 310 320
290 300 310 320 330 340
pF1KE3 VNLDRMYDLVAVVVHCGSGPNRGHYITIVKS--HGFWLLFDDDIVEKIDAQAIEEFYGLT
. . .:.: ::..: : . ::::. ::. : : :.:. .::.... .. :.
CCDS44 KGGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQ--LGIE
330 340 350 360 370 380
350 360
pF1KE3 SDISKNSESGYILFYQSRE
:... :.:
CCDS44 EDLAEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKF
390 400 410 420 430 440
>>CCDS81277.1 USP48 gene_id:84196|Hs108|chr1 (983 aa)
initn: 298 init1: 119 opt: 321 Z-score: 360.9 bits: 76.8 E(32554): 8.8e-14
Smith-Waterman score: 410; 27.7% identity (55.8% similar) in 339 aa overlap (34-356:88-396)
10 20 30 40 50
pF1KE3 RNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQ----------AL
. ::.:.: ::: :. :: ::
CCDS81 IGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQAL
60 70 80 90 100 110
60 70 80 90 100
pF1KE3 YFC-RPFRENVLAYKAQQKKK-ENLLTC--LADLFHSIATQKKKVGVIPPKKFISRLRKE
:.: . .:. :..: : : : :: . ..... : :. :.. :
CCDS81 YLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQNSNRR--YIDPSGFVKALG--
120 130 140 150 160 170
110 120 130 140 150 160
pF1KE3 NDLFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVH
.:. .::::.:: . ... . : :...:. . .: :.
CCDS81 ---LDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRN--------------------IVQ
180 190 200 210
170 180 190 200 210 220
pF1KE3 EIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYC
. : : . : : .: :. : .: .... . ..: :. .: . : : ....:.:
CCDS81 QQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFC
220 230 240 250 260 270
230 240 250 260 270 280
pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDA
:.: :::.: ...:. .:: : :.: :: . .: . ::. . : :. .. .
CCDS81 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFS-EILDMEPYVEH
280 290 300 310 320
290 300 310 320 330 340
pF1KE3 VNLDRMYDLVAVVVHCGSGPNRGHYITIVKS--HGFWLLFDDDIVEKIDAQAIEEFYGLT
. . .:.: ::..: : . ::::. ::. : : :.:. .::.... .. :.
CCDS81 KGGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQ--LGIE
330 340 350 360 370 380
350 360
pF1KE3 SDISKNSESGYILFYQSRE
:... :.:
CCDS81 EDLAEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKF
390 400 410 420 430 440
>>CCDS30623.1 USP48 gene_id:84196|Hs108|chr1 (1035 aa)
initn: 298 init1: 119 opt: 321 Z-score: 360.6 bits: 76.8 E(32554): 9.1e-14
Smith-Waterman score: 410; 27.7% identity (55.8% similar) in 339 aa overlap (34-356:88-396)
10 20 30 40 50
pF1KE3 RNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQ----------AL
. ::.:.: ::: :. :: ::
CCDS30 IGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQAL
60 70 80 90 100 110
60 70 80 90 100
pF1KE3 YFC-RPFRENVLAYKAQQKKK-ENLLTC--LADLFHSIATQKKKVGVIPPKKFISRLRKE
:.: . .:. :..: : : : :: . ..... : :. :.. :
CCDS30 YLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQNSNRR--YIDPSGFVKALG--
120 130 140 150 160 170
110 120 130 140 150 160
pF1KE3 NDLFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVH
.:. .::::.:: . ... . : :...:. . .: :.
CCDS30 ---LDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRN--------------------IVQ
180 190 200 210
170 180 190 200 210 220
pF1KE3 EIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYC
. : : . : : .: :. : .: .... . ..: :. .: . : : ....:.:
CCDS30 QQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFC
220 230 240 250 260 270
230 240 250 260 270 280
pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDA
:.: :::.: ...:. .:: : :.: :: . .: . ::. . : :. .. .
CCDS30 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFS-EILDMEPYVEH
280 290 300 310 320
290 300 310 320 330 340
pF1KE3 VNLDRMYDLVAVVVHCGSGPNRGHYITIVKS--HGFWLLFDDDIVEKIDAQAIEEFYGLT
. . .:.: ::..: : . ::::. ::. : : :.:. .::.... .. :.
CCDS30 KGGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQ--LGIE
330 340 350 360 370 380
350 360
pF1KE3 SDISKNSESGYILFYQSRE
:... :.:
CCDS30 EDLAEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKF
390 400 410 420 430 440
>>CCDS2418.1 USP37 gene_id:57695|Hs108|chr2 (979 aa)
initn: 286 init1: 102 opt: 316 Z-score: 355.3 bits: 75.8 E(32554): 1.8e-13
Smith-Waterman score: 316; 30.5% identity (56.9% similar) in 262 aa overlap (36-282:342-590)
10 20 30 40 50 60
pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFRENVLA
:. :.::::: :..::.:. . : ...:
CCDS24 SVKKLRCNQDYTGWNKPRVPLSSHQQQQLQGFSNLGNTCYMNAILQSLFSLQSFANDLLK
320 330 340 350 360 370
70 80 90 100 110 120
pF1KE3 YKAQQKKK--ENLLTCLADLF--HSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQDA
:: . :. .: :. ..: ... : .. :: . . . :..:::.::
CCDS24 QGIPWKKIPLNALIRRFAHLLVKKDICNSETKKDLL--KKVKNAISATAERFSGYMQNDA
380 390 400 410 420
130 140 150 160 170
pF1KE3 HEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPA--ENNKPELTWVHEIFQGTLTN-
::::. : : :.:. .:: : : .::. :.:.:... .. ..::
CCDS24 HEFLSQCL----DQLKED--MEKLNKTWK----TEPVSGEENSPDISATRAYTCPVITNL
430 440 450 460 470
180 190 200 210 220 230
pF1KE3 --ETR----CLNCETVSSKDEDFLDLSVDVEQNTSIT--HCLRDFSNTETLCSEQKYYCE
:.. : : . : :.: :::.:. . . . ..: . : .: ::
CCDS24 EFEVQHSIICKACGEIIPKREQFNDLSIDLPRRKKPLPPRSIQDSLDLFFRAEELEYSCE
480 490 500 510 520 530
240 250 260 270 280 290
pF1KE3 TCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAV
: .: : : . ..:: .: :::::... : .:.. .:..: : :
CCDS24 KCGGKC-ALVRHKFNRLPRVLILHLKRYSFNVALSLNNKIGQQVIIPRYLTLSSHCTENT
540 550 560 570 580 590
300 310 320 330 340 350
pF1KE3 NLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDI
CCDS24 KPPFTLGWSAHMAISRPLKASQMVNSCITSPSTPSKKFTFKSKSSLALCLDSDSEDELKR
600 610 620 630 640 650
366 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 01:28:20 2016 done: Tue Nov 8 01:28:21 2016
Total Scan time: 2.480 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]