Result of FASTA (omim) for
pFN21AE3670
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3670, 493 aa
1>>>pF1KE3670 493 - 493 aa - 493 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4484+/-0.000385; mu= 15.2407+/- 0.024
mean_var=154.5885+/-31.280, 0's: 0 Z-trim(117.7): 105 B-trim: 128 in 2/50
Lambda= 0.103154
statistics sampled from 29915 (30020) to 29915 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.352), width: 16
Scan time: 8.380
The best scores are: opt bits E(85289)
XP_016861020 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 493) 3509 534.2 3.2e-151
NP_006312 (OMIM: 605615) E3 ubiquitin-protein liga ( 493) 3509 534.2 3.2e-151
NP_001304262 (OMIM: 605615) E3 ubiquitin-protein l ( 493) 3509 534.2 3.2e-151
XP_016861021 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 493) 3509 534.2 3.2e-151
XP_016861027 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 2941 449.6 8e-126
XP_016861026 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 2941 449.6 8e-126
XP_011531577 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 2941 449.6 8e-126
XP_016861028 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 2941 449.6 8e-126
XP_016861025 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 2941 449.6 8e-126
XP_016861029 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 409) 2938 449.2 1.1e-125
XP_016861030 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 409) 2938 449.2 1.1e-125
NP_001304263 (OMIM: 605615) E3 ubiquitin-protein l ( 351) 2542 390.1 5.3e-108
XP_011531567 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 516) 2308 355.5 2.1e-97
XP_011531568 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 516) 2308 355.5 2.1e-97
XP_011531570 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 516) 2308 355.5 2.1e-97
XP_011531569 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 516) 2308 355.5 2.1e-97
XP_016861022 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 1740 270.9 5.2e-72
XP_011531573 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 1740 270.9 5.2e-72
XP_011531572 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 1740 270.9 5.2e-72
XP_016861023 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 1740 270.9 5.2e-72
XP_016861024 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 1740 270.9 5.2e-72
XP_011531575 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 432) 1737 270.4 7e-72
XP_011531578 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 254) 1206 191.2 3e-48
NP_005735 (OMIM: 605624) E3 ubiquitin-protein liga ( 557) 1135 181.0 7.7e-45
XP_011519741 (OMIM: 605624) PREDICTED: E3 ubiquiti ( 465) 1114 177.8 6e-44
XP_011519740 (OMIM: 605624) PREDICTED: E3 ubiquiti ( 498) 1066 170.7 8.9e-42
XP_011512731 (OMIM: 607489) PREDICTED: cullin-9 is (1834) 588 100.2 5.5e-20
XP_016866079 (OMIM: 607489) PREDICTED: cullin-9 is (1909) 588 100.2 5.6e-20
XP_011512729 (OMIM: 607489) PREDICTED: cullin-9 is (2095) 588 100.2 6e-20
XP_011512728 (OMIM: 607489) PREDICTED: cullin-9 is (2339) 588 100.3 6.4e-20
XP_011512727 (OMIM: 607489) PREDICTED: cullin-9 is (2456) 588 100.3 6.6e-20
NP_055904 (OMIM: 607489) cullin-9 [Homo sapiens] (2517) 588 100.3 6.8e-20
XP_011512726 (OMIM: 607489) PREDICTED: cullin-9 is (2539) 588 100.3 6.8e-20
XP_011512725 (OMIM: 607489) PREDICTED: cullin-9 is (2566) 588 100.3 6.8e-20
XP_016866078 (OMIM: 607489) PREDICTED: cullin-9 is (2566) 588 100.3 6.8e-20
XP_011512724 (OMIM: 607489) PREDICTED: cullin-9 is (2566) 588 100.3 6.8e-20
XP_016867854 (OMIM: 212840,609948) PREDICTED: E3 u ( 488) 248 48.9 3.9e-05
XP_011513738 (OMIM: 212840,609948) PREDICTED: E3 u ( 488) 248 48.9 3.9e-05
NP_996999 (OMIM: 212840,609948) E3 ubiquitin-prote ( 866) 248 49.2 5.7e-05
XP_016867852 (OMIM: 212840,609948) PREDICTED: E3 u ( 866) 248 49.2 5.7e-05
NP_996994 (OMIM: 212840,609948) E3 ubiquitin-prote ( 923) 248 49.2 5.9e-05
XP_005249842 (OMIM: 212840,609948) PREDICTED: E3 u ( 923) 248 49.2 5.9e-05
NP_001297261 (OMIM: 612487) E3 ubiquitin-protein l ( 921) 227 46.1 0.00052
NP_060469 (OMIM: 612487) E3 ubiquitin-protein liga (1072) 227 46.2 0.00057
NP_054643 (OMIM: 167000,211980,600116,602544,60757 ( 316) 204 42.2 0.0027
XP_016866398 (OMIM: 167000,211980,600116,602544,60 ( 385) 204 42.3 0.0031
NP_054642 (OMIM: 167000,211980,600116,602544,60757 ( 437) 204 42.3 0.0034
XP_011534165 (OMIM: 167000,211980,600116,602544,60 ( 464) 204 42.3 0.0035
NP_004553 (OMIM: 167000,211980,600116,602544,60757 ( 465) 204 42.3 0.0035
XP_016866397 (OMIM: 167000,211980,600116,602544,60 ( 503) 204 42.4 0.0037
>>XP_016861020 (OMIM: 605615) PREDICTED: E3 ubiquitin-pr (493 aa)
initn: 3509 init1: 3509 opt: 3509 Z-score: 2836.0 bits: 534.2 E(85289): 3.2e-151
Smith-Waterman score: 3509; 100.0% identity (100.0% similar) in 493 aa overlap (1-493:1-493)
10 20 30 40 50 60
pF1KE3 MSVDMNSQGSDSNEEDYDPNCEEEEEEEEDDPGDIEDYYVGVASDVEQQGADAFDPEEYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSVDMNSQGSDSNEEDYDPNCEEEEEEEEDDPGDIEDYYVGVASDVEQQGADAFDPEEYQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FTCLTYKESEGALNEHMTSLASVLKVSHSVAKLILVNFHWQVSEILDRYKSNSAQLLVEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FTCLTYKESEGALNEHMTSLASVLKVSHSVAKLILVNFHWQVSEILDRYKSNSAQLLVEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDGVGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDGVGVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPMVIRVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPMVIRVQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHTKDCPKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHTKDCPKC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 NICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIVNQSQQAQARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIVNQSQQAQARE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 ALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGTWIDWQYLQNAAKLLAKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGTWIDWQYLQNAAKLLAKC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 RYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVERADSYDRGDLENQMHIAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVERADSYDRGDLENQMHIAE
430 440 450 460 470 480
490
pF1KE3 QRRRTLLKDFHDT
:::::::::::::
XP_016 QRRRTLLKDFHDT
490
>>NP_006312 (OMIM: 605615) E3 ubiquitin-protein ligase A (493 aa)
initn: 3509 init1: 3509 opt: 3509 Z-score: 2836.0 bits: 534.2 E(85289): 3.2e-151
Smith-Waterman score: 3509; 100.0% identity (100.0% similar) in 493 aa overlap (1-493:1-493)
10 20 30 40 50 60
pF1KE3 MSVDMNSQGSDSNEEDYDPNCEEEEEEEEDDPGDIEDYYVGVASDVEQQGADAFDPEEYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSVDMNSQGSDSNEEDYDPNCEEEEEEEEDDPGDIEDYYVGVASDVEQQGADAFDPEEYQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FTCLTYKESEGALNEHMTSLASVLKVSHSVAKLILVNFHWQVSEILDRYKSNSAQLLVEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FTCLTYKESEGALNEHMTSLASVLKVSHSVAKLILVNFHWQVSEILDRYKSNSAQLLVEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDGVGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDGVGVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPMVIRVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPMVIRVQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHTKDCPKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHTKDCPKC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 NICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIVNQSQQAQARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIVNQSQQAQARE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 ALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGTWIDWQYLQNAAKLLAKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGTWIDWQYLQNAAKLLAKC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 RYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVERADSYDRGDLENQMHIAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVERADSYDRGDLENQMHIAE
430 440 450 460 470 480
490
pF1KE3 QRRRTLLKDFHDT
:::::::::::::
NP_006 QRRRTLLKDFHDT
490
>>NP_001304262 (OMIM: 605615) E3 ubiquitin-protein ligas (493 aa)
initn: 3509 init1: 3509 opt: 3509 Z-score: 2836.0 bits: 534.2 E(85289): 3.2e-151
Smith-Waterman score: 3509; 100.0% identity (100.0% similar) in 493 aa overlap (1-493:1-493)
10 20 30 40 50 60
pF1KE3 MSVDMNSQGSDSNEEDYDPNCEEEEEEEEDDPGDIEDYYVGVASDVEQQGADAFDPEEYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVDMNSQGSDSNEEDYDPNCEEEEEEEEDDPGDIEDYYVGVASDVEQQGADAFDPEEYQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FTCLTYKESEGALNEHMTSLASVLKVSHSVAKLILVNFHWQVSEILDRYKSNSAQLLVEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTCLTYKESEGALNEHMTSLASVLKVSHSVAKLILVNFHWQVSEILDRYKSNSAQLLVEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDGVGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDGVGVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPMVIRVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPMVIRVQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHTKDCPKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHTKDCPKC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 NICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIVNQSQQAQARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIVNQSQQAQARE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 ALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGTWIDWQYLQNAAKLLAKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGTWIDWQYLQNAAKLLAKC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 RYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVERADSYDRGDLENQMHIAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVERADSYDRGDLENQMHIAE
430 440 450 460 470 480
490
pF1KE3 QRRRTLLKDFHDT
:::::::::::::
NP_001 QRRRTLLKDFHDT
490
>>XP_016861021 (OMIM: 605615) PREDICTED: E3 ubiquitin-pr (493 aa)
initn: 3509 init1: 3509 opt: 3509 Z-score: 2836.0 bits: 534.2 E(85289): 3.2e-151
Smith-Waterman score: 3509; 100.0% identity (100.0% similar) in 493 aa overlap (1-493:1-493)
10 20 30 40 50 60
pF1KE3 MSVDMNSQGSDSNEEDYDPNCEEEEEEEEDDPGDIEDYYVGVASDVEQQGADAFDPEEYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSVDMNSQGSDSNEEDYDPNCEEEEEEEEDDPGDIEDYYVGVASDVEQQGADAFDPEEYQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FTCLTYKESEGALNEHMTSLASVLKVSHSVAKLILVNFHWQVSEILDRYKSNSAQLLVEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FTCLTYKESEGALNEHMTSLASVLKVSHSVAKLILVNFHWQVSEILDRYKSNSAQLLVEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDGVGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDGVGVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPMVIRVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPMVIRVQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHTKDCPKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHTKDCPKC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 NICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIVNQSQQAQARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIVNQSQQAQARE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 ALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGTWIDWQYLQNAAKLLAKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGTWIDWQYLQNAAKLLAKC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 RYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVERADSYDRGDLENQMHIAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVERADSYDRGDLENQMHIAE
430 440 450 460 470 480
490
pF1KE3 QRRRTLLKDFHDT
:::::::::::::
XP_016 QRRRTLLKDFHDT
490
>>XP_016861027 (OMIM: 605615) PREDICTED: E3 ubiquitin-pr (421 aa)
initn: 2938 init1: 2938 opt: 2941 Z-score: 2380.0 bits: 449.6 E(85289): 8e-126
Smith-Waterman score: 2941; 97.6% identity (98.8% similar) in 420 aa overlap (77-493:2-421)
50 60 70 80 90 100
pF1KE3 EQQGADAFDPEEYQFTCLTYKESEGALNEHMTSLASVLK---VSHSVAKLILVNFHWQVS
.:... .: ::::::::::::::::::
XP_016 MLTAISCILPMALVSHSVAKLILVNFHWQVS
10 20 30
110 120 130 140 150 160
pF1KE3 EILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRS
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE3 CWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHY
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE3 QLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE3 SETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRY
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE3 KENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGT
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE3 WIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVER
340 350 360 370 380 390
470 480 490
pF1KE3 ADSYDRGDLENQMHIAEQRRRTLLKDFHDT
::::::::::::::::::::::::::::::
XP_016 ADSYDRGDLENQMHIAEQRRRTLLKDFHDT
400 410 420
>>XP_016861026 (OMIM: 605615) PREDICTED: E3 ubiquitin-pr (421 aa)
initn: 2938 init1: 2938 opt: 2941 Z-score: 2380.0 bits: 449.6 E(85289): 8e-126
Smith-Waterman score: 2941; 97.6% identity (98.8% similar) in 420 aa overlap (77-493:2-421)
50 60 70 80 90 100
pF1KE3 EQQGADAFDPEEYQFTCLTYKESEGALNEHMTSLASVLK---VSHSVAKLILVNFHWQVS
.:... .: ::::::::::::::::::
XP_016 MLTAISCILPMALVSHSVAKLILVNFHWQVS
10 20 30
110 120 130 140 150 160
pF1KE3 EILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRS
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE3 CWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHY
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE3 QLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE3 SETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRY
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE3 KENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGT
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE3 WIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVER
340 350 360 370 380 390
470 480 490
pF1KE3 ADSYDRGDLENQMHIAEQRRRTLLKDFHDT
::::::::::::::::::::::::::::::
XP_016 ADSYDRGDLENQMHIAEQRRRTLLKDFHDT
400 410 420
>>XP_011531577 (OMIM: 605615) PREDICTED: E3 ubiquitin-pr (421 aa)
initn: 2938 init1: 2938 opt: 2941 Z-score: 2380.0 bits: 449.6 E(85289): 8e-126
Smith-Waterman score: 2941; 97.6% identity (98.8% similar) in 420 aa overlap (77-493:2-421)
50 60 70 80 90 100
pF1KE3 EQQGADAFDPEEYQFTCLTYKESEGALNEHMTSLASVLK---VSHSVAKLILVNFHWQVS
.:... .: ::::::::::::::::::
XP_011 MLTAISCILPMALVSHSVAKLILVNFHWQVS
10 20 30
110 120 130 140 150 160
pF1KE3 EILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRS
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE3 CWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHY
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE3 QLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE3 SETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRY
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE3 KENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGT
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE3 WIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVER
340 350 360 370 380 390
470 480 490
pF1KE3 ADSYDRGDLENQMHIAEQRRRTLLKDFHDT
::::::::::::::::::::::::::::::
XP_011 ADSYDRGDLENQMHIAEQRRRTLLKDFHDT
400 410 420
>>XP_016861028 (OMIM: 605615) PREDICTED: E3 ubiquitin-pr (421 aa)
initn: 2938 init1: 2938 opt: 2941 Z-score: 2380.0 bits: 449.6 E(85289): 8e-126
Smith-Waterman score: 2941; 97.6% identity (98.8% similar) in 420 aa overlap (77-493:2-421)
50 60 70 80 90 100
pF1KE3 EQQGADAFDPEEYQFTCLTYKESEGALNEHMTSLASVLK---VSHSVAKLILVNFHWQVS
.:... .: ::::::::::::::::::
XP_016 MLTAISCILPMALVSHSVAKLILVNFHWQVS
10 20 30
110 120 130 140 150 160
pF1KE3 EILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRS
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE3 CWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHY
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE3 QLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE3 SETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRY
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE3 KENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGT
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE3 WIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVER
340 350 360 370 380 390
470 480 490
pF1KE3 ADSYDRGDLENQMHIAEQRRRTLLKDFHDT
::::::::::::::::::::::::::::::
XP_016 ADSYDRGDLENQMHIAEQRRRTLLKDFHDT
400 410 420
>>XP_016861025 (OMIM: 605615) PREDICTED: E3 ubiquitin-pr (421 aa)
initn: 2938 init1: 2938 opt: 2941 Z-score: 2380.0 bits: 449.6 E(85289): 8e-126
Smith-Waterman score: 2941; 97.6% identity (98.8% similar) in 420 aa overlap (77-493:2-421)
50 60 70 80 90 100
pF1KE3 EQQGADAFDPEEYQFTCLTYKESEGALNEHMTSLASVLK---VSHSVAKLILVNFHWQVS
.:... .: ::::::::::::::::::
XP_016 MLTAISCILPMALVSHSVAKLILVNFHWQVS
10 20 30
110 120 130 140 150 160
pF1KE3 EILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRS
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE3 CWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHY
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE3 QLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE3 SETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRY
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE3 KENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGT
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE3 WIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVER
340 350 360 370 380 390
470 480 490
pF1KE3 ADSYDRGDLENQMHIAEQRRRTLLKDFHDT
::::::::::::::::::::::::::::::
XP_016 ADSYDRGDLENQMHIAEQRRRTLLKDFHDT
400 410 420
>>XP_016861029 (OMIM: 605615) PREDICTED: E3 ubiquitin-pr (409 aa)
initn: 2938 init1: 2938 opt: 2938 Z-score: 2377.7 bits: 449.2 E(85289): 1.1e-125
Smith-Waterman score: 2938; 100.0% identity (100.0% similar) in 408 aa overlap (86-493:2-409)
60 70 80 90 100 110
pF1KE3 PEEYQFTCLTYKESEGALNEHMTSLASVLKVSHSVAKLILVNFHWQVSEILDRYKSNSAQ
::::::::::::::::::::::::::::::
XP_016 MVSHSVAKLILVNFHWQVSEILDRYKSNSAQ
10 20 30
120 130 140 150 160 170
pF1KE3 LLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKD
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE3 GVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPM
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE3 VIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHTK
160 170 180 190 200 210
300 310 320 330 340 350
pF1KE3 DCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIVNQSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIVNQSQQ
220 230 240 250 260 270
360 370 380 390 400 410
pF1KE3 AQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGTWIDWQYLQNAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGTWIDWQYLQNAAK
280 290 300 310 320 330
420 430 440 450 460 470
pF1KE3 LLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVERADSYDRGDLENQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVERADSYDRGDLENQ
340 350 360 370 380 390
480 490
pF1KE3 MHIAEQRRRTLLKDFHDT
::::::::::::::::::
XP_016 MHIAEQRRRTLLKDFHDT
400
493 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:36:07 2016 done: Sun Nov 6 23:36:08 2016
Total Scan time: 8.380 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]