Result of FASTA (omim) for
pFN21AE3667
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3667, 165 aa
1>>>pF1KE3667 165 - 165 aa - 165 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6320+/-0.000371; mu= 10.6285+/- 0.023
mean_var=73.9672+/-14.921, 0's: 0 Z-trim(113.6): 71 B-trim: 171 in 1/52
Lambda= 0.149126
statistics sampled from 22980 (23051) to 22980 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.27), width: 16
Scan time: 5.620
The best scores are: opt bits E(85289)
NP_006389 (OMIM: 606050) ubiquitin D [Homo sapiens ( 165) 1082 241.8 3.9e-64
NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sap ( 685) 278 69.1 1.5e-11
NP_001307950 (OMIM: 191321) ubiquitin-60S ribosoma ( 135) 163 44.0 0.00011
XP_016882687 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 203) 163 44.1 0.00015
NP_001307947 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 154 42.1 0.00039
NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal p ( 128) 154 42.1 0.00039
NP_001029102 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 154 42.1 0.00039
NP_001307946 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 154 42.1 0.00039
NP_001307949 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 154 42.1 0.00039
NP_001307948 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 154 42.1 0.00039
XP_005260109 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 154 42.1 0.00047
XP_005260110 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 154 42.1 0.00047
NP_002945 (OMIM: 191343) ubiquitin-40S ribosomal p ( 156) 154 42.1 0.00047
XP_005260111 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 154 42.1 0.00047
XP_006722934 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 154 42.1 0.00047
NP_001129064 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 154 42.1 0.00047
NP_001170884 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 154 42.1 0.00047
NP_001268645 (OMIM: 119540,191339) polyubiquitin-B ( 229) 154 42.2 0.00064
NP_001268647 (OMIM: 119540,191339) polyubiquitin-B ( 229) 154 42.2 0.00064
NP_061828 (OMIM: 119540,191339) polyubiquitin-B pr ( 229) 154 42.2 0.00064
NP_001268648 (OMIM: 119540,191339) polyubiquitin-B ( 229) 154 42.2 0.00064
NP_001268646 (OMIM: 119540,191339) polyubiquitin-B ( 229) 154 42.2 0.00064
NP_001268649 (OMIM: 119540,191339) polyubiquitin-B ( 229) 154 42.2 0.00064
NP_001248754 (OMIM: 603281) 2'-5'-oligoadenylate s ( 384) 154 42.3 0.00099
NP_005092 (OMIM: 147571,616126) ubiquitin-like pro ( 165) 149 41.0 0.001
NP_003724 (OMIM: 603281) 2'-5'-oligoadenylate synt ( 514) 154 42.4 0.0013
>>NP_006389 (OMIM: 606050) ubiquitin D [Homo sapiens] (165 aa)
initn: 1082 init1: 1082 opt: 1082 Z-score: 1272.5 bits: 241.8 E(85289): 3.9e-64
Smith-Waterman score: 1082; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)
10 20 30 40 50 60
pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIE
70 80 90 100 110 120
130 140 150 160
pF1KE3 TKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG
:::::::::::::::::::::::::::::::::::::::::::::
NP_006 TKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG
130 140 150 160
>>NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sapiens (685 aa)
initn: 154 init1: 154 opt: 278 Z-score: 328.3 bits: 69.1 E(85289): 1.5e-11
Smith-Waterman score: 278; 32.5% identity (68.2% similar) in 157 aa overlap (10-165:383-532)
10 20 30
pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRS
. :.. .:....: :.....: ....
NP_066 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
360 370 380 390 400 410
40 50 60 70 80 90
pF1KE3 KTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFL-VESGDE
: .: ..: :....: :. :.::.:.:.::.:.::.:.. . .:. . .:
NP_066 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG----MQIFVKTLTG--
420 430 440 450 460
100 110 120 130 140 150
pF1KE3 AKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL
: :.:. :... .::: :. : :: :. : . ::.::::. ..::.:.: . : :
NP_066 -KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL
470 480 490 500 510 520
160
pF1KE3 ACYCIGG
. ::
NP_066 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
530 540 550 560 570 580
>--
initn: 154 init1: 154 opt: 278 Z-score: 328.3 bits: 69.1 E(85289): 1.5e-11
Smith-Waterman score: 278; 32.5% identity (68.2% similar) in 157 aa overlap (10-165:231-380)
10 20 30
pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRS
. :.. .:....: :.....: ....
NP_066 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
210 220 230 240 250 260
40 50 60 70 80 90
pF1KE3 KTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFL-VESGDE
: .: ..: :....: :. :.::.:.:.::.:.::.:.. . .:. . .:
NP_066 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG----MQIFVKTLTG--
270 280 290 300 310
100 110 120 130 140 150
pF1KE3 AKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL
: :.:. :... .::: :. : :: :. : . ::.::::. ..::.:.: . : :
NP_066 -KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL
320 330 340 350 360 370
160
pF1KE3 ACYCIGG
. ::
NP_066 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
380 390 400 410 420 430
>>NP_001307950 (OMIM: 191321) ubiquitin-60S ribosomal pr (135 aa)
initn: 154 init1: 154 opt: 163 Z-score: 205.2 bits: 44.0 E(85289): 0.00011
Smith-Waterman score: 178; 29.3% identity (73.9% similar) in 92 aa overlap (1-88:1-92)
10 20 30 40 50 60
pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR
: :. . . . :.. .:....: :.....: ....: .: ..: :....: :.
NP_001 MMPKDANMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK
:.::.:.:.::.:.::.:. ...:: ..:
NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK
70 80 90 100 110 120
120 130 140 150 160
pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG
NP_001 KCGHTNNLRPKKKVK
130
>>XP_016882687 (OMIM: 191321) PREDICTED: ubiquitin-60S r (203 aa)
initn: 154 init1: 154 opt: 163 Z-score: 202.6 bits: 44.1 E(85289): 0.00015
Smith-Waterman score: 178; 29.3% identity (73.9% similar) in 92 aa overlap (1-88:41-132)
10 20 30
pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSV
: :. . . . :.. .:....: :..
XP_016 RLAAGAACADQDLAAVEEGGTAFREDGSSKMMPKDANMQIFVKTLTGKTITLEVEPSDTI
20 30 40 50 60 70
40 50 60 70 80
pF1KE3 KKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLK----VVKPSDE
...: ....: .: ..: :....: :. :.::.:.:.::.:.::.:. ...:: .
XP_016 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLR
80 90 100 110 120 130
90 100 110 120 130 140
pF1KE3 ELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMA
.:
XP_016 QLAQKYNCDKMICRKYVCSDAWGAVGAAGVGVCPHPPLLSLCRCYARLHPRAVNCRKKKC
140 150 160 170 180 190
>>NP_001307947 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 154 init1: 154 opt: 154 Z-score: 195.1 bits: 42.1 E(85289): 0.00039
Smith-Waterman score: 165; 30.1% identity (75.9% similar) in 83 aa overlap (10-88:3-85)
10 20 30 40 50 60
pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR
. :.. .:....: :.....: ....: .: ..: :....: :.
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK
:.::.:.:.::.:.::.:. ...:: ..:
NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG
NP_001 KCGHTNNLRPKKKVK
120
>>NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal prote (128 aa)
initn: 154 init1: 154 opt: 154 Z-score: 195.1 bits: 42.1 E(85289): 0.00039
Smith-Waterman score: 165; 30.1% identity (75.9% similar) in 83 aa overlap (10-88:3-85)
10 20 30 40 50 60
pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR
. :.. .:....: :.....: ....: .: ..: :....: :.
NP_003 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK
:.::.:.:.::.:.::.:. ...:: ..:
NP_003 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG
NP_003 KCGHTNNLRPKKKVK
120
>>NP_001029102 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 154 init1: 154 opt: 154 Z-score: 195.1 bits: 42.1 E(85289): 0.00039
Smith-Waterman score: 165; 30.1% identity (75.9% similar) in 83 aa overlap (10-88:3-85)
10 20 30 40 50 60
pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR
. :.. .:....: :.....: ....: .: ..: :....: :.
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK
:.::.:.:.::.:.::.:. ...:: ..:
NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG
NP_001 KCGHTNNLRPKKKVK
120
>>NP_001307946 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 154 init1: 154 opt: 154 Z-score: 195.1 bits: 42.1 E(85289): 0.00039
Smith-Waterman score: 165; 30.1% identity (75.9% similar) in 83 aa overlap (10-88:3-85)
10 20 30 40 50 60
pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR
. :.. .:....: :.....: ....: .: ..: :....: :.
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK
:.::.:.:.::.:.::.:. ...:: ..:
NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG
NP_001 KCGHTNNLRPKKKVK
120
>>NP_001307949 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 154 init1: 154 opt: 154 Z-score: 195.1 bits: 42.1 E(85289): 0.00039
Smith-Waterman score: 165; 30.1% identity (75.9% similar) in 83 aa overlap (10-88:3-85)
10 20 30 40 50 60
pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR
. :.. .:....: :.....: ....: .: ..: :....: :.
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK
:.::.:.:.::.:.::.:. ...:: ..:
NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG
NP_001 KCGHTNNLRPKKKVK
120
>>NP_001307948 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 154 init1: 154 opt: 154 Z-score: 195.1 bits: 42.1 E(85289): 0.00039
Smith-Waterman score: 165; 30.1% identity (75.9% similar) in 83 aa overlap (10-88:3-85)
10 20 30 40 50 60
pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR
. :.. .:....: :.....: ....: .: ..: :....: :.
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK
:.::.:.:.::.:.::.:. ...:: ..:
NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG
NP_001 KCGHTNNLRPKKKVK
120
165 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:41:00 2016 done: Mon Nov 7 01:41:01 2016
Total Scan time: 5.620 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]