FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3667, 165 aa
  1>>>pF1KE3667 165 - 165 aa - 165 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8004+/-0.000794; mu= 9.3546+/- 0.047
 mean_var=68.2318+/-13.697, 0's: 0 Z-trim(106.8): 23  B-trim: 0 in 0/51
 Lambda= 0.155268
 statistics sampled from 9189 (9211) to 9189 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.283), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS4662.1 UBD gene_id:10537|Hs108|chr6            ( 165) 1082 251.0 2.4e-67
CCDS9260.1 UBC gene_id:7316|Hs108|chr12            ( 685)  278 71.1 1.4e-12


>>CCDS4662.1 UBD gene_id:10537|Hs108|chr6                 (165 aa)
 initn: 1082 init1: 1082 opt: 1082  Z-score: 1322.6  bits: 251.0 E(32554): 2.4e-67
Smith-Waterman score: 1082; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIE
               70        80        90       100       110       120

              130       140       150       160     
pF1KE3 TKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG
              130       140       150       160     

>>CCDS9260.1 UBC gene_id:7316|Hs108|chr12                 (685 aa)
 initn: 154 init1: 154 opt: 278  Z-score: 339.2  bits: 71.1 E(32554): 1.4e-12
Smith-Waterman score: 278; 32.5% identity (68.2% similar) in 157 aa overlap (10-165:383-532)

                                    10        20        30         
pF1KE3                      MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRS
                                     . :..     .:....: :.....: ....
CCDS92 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
            360       370       380       390       400       410  

      40        50        60        70        80        90         
pF1KE3 KTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFL-VESGDE
       :  .: ..: :....: :.  :.::.:.:.::.:.::.:..       . .:. . .:  
CCDS92 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG----MQIFVKTLTG--
            420       430       440       450           460        

      100       110       120       130       140       150        
pF1KE3 AKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL
        :   :.:. :... .::: :. : :: :. : .   ::.::::. ..::.:.: . : :
CCDS92 -KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL
         470       480       490       500       510       520     

      160                                                          
pF1KE3 ACYCIGG                                                     
       .    ::                                                     
CCDS92 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
         530       540       550       560       570       580     

>--
 initn: 154 init1: 154 opt: 278  Z-score: 339.2  bits: 71.1 E(32554): 1.4e-12
Smith-Waterman score: 278; 32.5% identity (68.2% similar) in 157 aa overlap (10-165:231-380)

                                    10        20        30         
pF1KE3                      MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRS
                                     . :..     .:....: :.....: ....
CCDS92 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
              210       220       230       240       250       260

      40        50        60        70        80        90         
pF1KE3 KTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFL-VESGDE
       :  .: ..: :....: :.  :.::.:.:.::.:.::.:..       . .:. . .:  
CCDS92 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG----MQIFVKTLTG--
              270       280       290       300           310      

      100       110       120       130       140       150        
pF1KE3 AKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL
        :   :.:. :... .::: :. : :: :. : .   ::.::::. ..::.:.: . : :
CCDS92 -KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL
           320       330       340       350       360       370   

      160                                                          
pF1KE3 ACYCIGG                                                     
       .    ::                                                     
CCDS92 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
           380       390       400       410       420       430   




165 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:40:59 2016 done: Mon Nov  7 01:41:00 2016
 Total Scan time:  1.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]