Result of FASTA (ccds) for
pFN21AE3642
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3642, 316 aa
1>>>pF1KE3642 316 - 316 aa - 316 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8943+/-0.000822; mu= 12.1991+/- 0.049
mean_var=63.7386+/-12.556, 0's: 0 Z-trim(106.8): 34 B-trim: 42 in 1/51
Lambda= 0.160647
statistics sampled from 9181 (9212) to 9181 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.283), width: 16
Scan time: 2.420
The best scores are: opt bits E(32554)
CCDS11227.1 TNFAIP1 gene_id:7126|Hs108|chr17 ( 316) 2095 494.1 5.9e-140
CCDS9128.1 KCTD10 gene_id:83892|Hs108|chr12 ( 313) 1452 345.1 4.2e-95
CCDS10661.1 KCTD13 gene_id:253980|Hs108|chr16 ( 329) 1356 322.8 2.2e-88
CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 ( 260) 253 67.2 1.6e-11
CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 ( 237) 245 65.3 5.3e-11
>>CCDS11227.1 TNFAIP1 gene_id:7126|Hs108|chr17 (316 aa)
initn: 2095 init1: 2095 opt: 2095 Z-score: 2626.2 bits: 494.1 E(32554): 5.9e-140
Smith-Waterman score: 2095; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)
10 20 30 40 50 60
pF1KE3 MSGDTCLCPASGAKPKLSGFKGGGLGNKYVQLNVGGSLYYTTVRALTRHDTMLKAMFSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSGDTCLCPASGAKPKLSGFKGGGLGNKYVQLNVGGSLYYTTVRALTRHDTMLKAMFSGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MEVLTDKEGWILIDRCGKHFGTILNYLRDDTITLPQNRQEIKELMAEAKYYLIQGLVNMC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEVLTDKEGWILIDRCGKHFGTILNYLRDDTITLPQNRQEIKELMAEAKYYLIQGLVNMC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QSALQDKKDSYQPVCNIPIITSLKEEERLIESSTKPVVKLLYNRSNNKYSYTSNSDDHLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QSALQDKKDSYQPVCNIPIITSLKEEERLIESSTKPVVKLLYNRSNNKYSYTSNSDDHLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGRKLAEVCCTSIVYATEKKQTKVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGRKLAEVCCTSIVYATEKKQTKVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 FPEARIYEETLNVLLYETPRVPDNSLLEATSRSRSQASPSEDEETFELRDRVRRIHVKRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FPEARIYEETLNVLLYETPRVPDNSLLEATSRSRSQASPSEDEETFELRDRVRRIHVKRY
250 260 270 280 290 300
310
pF1KE3 STYDDRQLGHQSTHRD
::::::::::::::::
CCDS11 STYDDRQLGHQSTHRD
310
>>CCDS9128.1 KCTD10 gene_id:83892|Hs108|chr12 (313 aa)
initn: 880 init1: 780 opt: 1452 Z-score: 1820.9 bits: 345.1 E(32554): 4.2e-95
Smith-Waterman score: 1452; 70.7% identity (88.2% similar) in 314 aa overlap (1-311:4-313)
10 20 30 40 50
pF1KE3 MSGDTCLCPA-SGAKPKLSGFKGGGLGNKYVQLNVGGSLYYTTVRALTRHDTMLKAM
:::.. . : .: . ..::: . ..:::.:::::.:::::...::..:::::::
CCDS91 MEEMSGESVVSSAVPAAATRTTSFKGTSPSSKYVKLNVGGALYYTTMQTLTKQDTMLKAM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 FSGRMEVLTDKEGWILIDRCGKHFGTILNYLRDDTITLPQNRQEIKELMAEAKYYLIQGL
::::::::::.:::::::::::::::::::::: .. ::..:.::.::.:::::::.:::
CCDS91 FSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGAVPLPESRREIEELLAEAKYYLVQGL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 VNMCQSALQDKKDSYQPVCNIPIITSLKEEERLIESSTKPVVKLLYNRSNNKYSYTSNSD
:. ::.:::.: :.:.: :..:.::: :::..:: .:.::.:::::::::::::::::::
CCDS91 VEECQAALQNK-DTYEPFCKVPVITSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNSD
130 140 150 160 170
180 190 200 210 220 230
pF1KE3 DHLLKNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGRKLAEVCCTSIVYATEKKQ
:..::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS91 DNMLKNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 TKVEFPEARIYEETLNVLLYETP--RVPDNSLLEATSRSRSQASPSEDEETFELRDRVRR
::::::::::::::::.::::. : :::.:::::. . ... ...: : .::::
CCDS91 TKVEFPEARIYEETLNILLYEAQDGRGPDNALLEATGGAAGRSHHLDEDEERERIERVRR
240 250 260 270 280 290
300 310
pF1KE3 IHVKRYSTYDDRQLGHQSTHRD
::.:: ::: ::
CCDS91 IHIKRP---DDRAHLHQ
300 310
>>CCDS10661.1 KCTD13 gene_id:253980|Hs108|chr16 (329 aa)
initn: 1389 init1: 1343 opt: 1356 Z-score: 1700.2 bits: 322.8 E(32554): 2.2e-88
Smith-Waterman score: 1361; 64.4% identity (84.4% similar) in 326 aa overlap (2-316:6-329)
10 20 30 40
pF1KE3 MSGDTCLCPASGAKPKLSGFKGG----GL-----GNKYVQLNVGGSLYYTTVRALT
:: . : :: ::.. : :: ..:::.:::::::.:::.:.::
CCDS10 MSAEASGPAAAAAPSLEAPKPSGLEPGPAAYGLKPLTPNSKYVKLNVGGSLHYTTLRTLT
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 RHDTMLKAMFSGRMEVLTDKEGWILIDRCGKHFGTILNYLRDDTITLPQNRQEIKELMAE
.:::::::::::.::::: ::.:::: :.::::::::::: .. ::.. .:. ::..:
CCDS10 GQDTMLKAMFSGRVEVLTDAGGWVLIDRSGRHFGTILNYLRDGSVPLPESTRELGELLGE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 AKYYLIQGLVNMCQSALQDKKDSYQPVCNIPIITSLKEEERLIESSTKPVVKLLYNRSNN
:.:::.:::.. :: :::.:... .:.: ::..:: .::..:. :..:::::::.:::::
CCDS10 ARYYLVQGLIEDCQLALQQKRETLSPLCLIPMVTSPREEQQLLASTSKPVVKLLHNRSNN
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 KYSYTSNSDDHLLKNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGRKLAEVCCTS
::::::.:::.:::::::::::.:::.::.::.:::.:::::::::::::::.:::::::
CCDS10 KYSYTSTSDDNLLKNIELFDKLALRFHGRLLFLKDVLGDEICCWSFYGQGRKIAEVCCTS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE3 IVYATEKKQTKVEFPEARIYEETLNVLLYETPRVPDNSLLEATSRSRSQ--ASPSEDEET
:::::::::::::::::::.:::::.:.::::: :: .:::::. . . :. .::::.
CCDS10 IVYATEKKQTKVEFPEARIFEETLNILIYETPRGPDPALLEATGGAAGAGGAGRGEDEEN
250 260 270 280 290 300
290 300 310
pF1KE3 FELRDRVRRIHVKRYSTYDDRQLGHQSTHRD
: :::::::.:. :.:.: :.: . .:
CCDS10 RE--HRVRRIHVRRHITHDERPHGQQIVFKD
310 320
>>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 (260 aa)
initn: 275 init1: 200 opt: 253 Z-score: 320.4 bits: 67.2 E(32554): 1.6e-11
Smith-Waterman score: 260; 34.3% identity (61.0% similar) in 172 aa overlap (30-199:5-164)
10 20 30 40 50
pF1KE3 MSGDTCLCPASGAKPKLSGFKGGGLGNKYVQLNVGGSLYYTTVRALTRH-DTMLKAMFSG
. :::::.:: :.. .:: :.:: :::::
CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSG
10 20 30
60 70 80 90 100 110
pF1KE3 RMEVLTDKEGWILIDRCGKHFGTILNYLRDDTITLPQNRQEIKELMAEAKYYLIQGLVNM
.: . :..: .::: :: : :::.:: . . ::.. ::. : :: .: .: :..
CCDS31 KMPTKRDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIE-
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE3 CQSALQDKK-DSYQPVCNIPIITSLKEEERLIESSTKPVVKLLYNRSNNKYSYTSNSDDH
:::.:. . . : . .:... . .. ... . .. :: .:.: .
CCDS31 ---ALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQI--------YSLSSSSMEV
100 110 120 130 140
180 190 200 210 220 230
pF1KE3 LLKNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGRKLAEVCCTSIVYATEKKQTK
. :: . : :.. : ::
CCDS31 FNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQDPNHLTLDWVANVEGLPEEEYTKQ
150 160 170 180 190 200
>>CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 (237 aa)
initn: 242 init1: 167 opt: 245 Z-score: 311.1 bits: 65.3 E(32554): 5.3e-11
Smith-Waterman score: 245; 37.1% identity (63.6% similar) in 140 aa overlap (23-161:7-140)
10 20 30 40 50
pF1KE3 MSGDTCLCPASGAKPKLSGFKGGGLGNKYVQLNVGGSLYYTTVRALTRH-DTMLKAMFSG
: . . : ::::: :: :.. .:::. :.:: :::.:
CCDS28 MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGG
10 20 30 40
60 70 80 90 100 110
pF1KE3 RMEVLTDKEGWILIDRCGKHFGTILNYLRDDTITLPQNRQEIKELMAEAKYYLIQGLVNM
. . : .: .::: : : .::.:: . .::: . .:. : :: .: :. :..
CCDS28 DFPTARDPQGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQ-
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 CQSALQDKKDSYQPVCNIPIITSLKEEERLIESSTKPVVKLLYNRSNNKYSYTSNSDDHL
: :.: : : :. .. .. :. ..: . :. ::. ..
CCDS28 C---LNDPKPLY-PMDTFEEVVELSSTRKLSKYSN-PVAVIITQLTITTKVHSLLEGISN
110 120 130 140 150
180 190 200 210 220 230
pF1KE3 LKNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGRKLAEVCCTSIVYATEKKQTKV
CCDS28 YFTKWNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERAN
160 170 180 190 200 210
316 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:47:34 2016 done: Mon Nov 7 02:47:35 2016
Total Scan time: 2.420 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]