Result of FASTA (ccds) for
pFN21AE3641
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3641, 503 aa
1>>>pF1KE3641 503 - 503 aa - 503 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7511+/-0.000803; mu= 16.9697+/- 0.048
mean_var=90.0583+/-17.870, 0's: 0 Z-trim(109.9): 11 B-trim: 0 in 0/52
Lambda= 0.135149
statistics sampled from 11192 (11199) to 11192 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.344), width: 16
Scan time: 2.970
The best scores are: opt bits E(32554)
CCDS46081.1 COQ8B gene_id:79934|Hs108|chr19 ( 503) 3458 684.3 8.5e-197
CCDS12562.1 COQ8B gene_id:79934|Hs108|chr19 ( 544) 2587 514.5 1.2e-145
CCDS1557.1 COQ8A gene_id:56997|Hs108|chr1 ( 647) 1518 306.1 7.6e-83
>>CCDS46081.1 COQ8B gene_id:79934|Hs108|chr19 (503 aa)
initn: 3458 init1: 3458 opt: 3458 Z-score: 3646.6 bits: 684.3 E(32554): 8.5e-197
Smith-Waterman score: 3458; 100.0% identity (100.0% similar) in 503 aa overlap (1-503:1-503)
10 20 30 40 50 60
pF1KE3 MWLKVGGLLRGTGGQLGQTVGWPCGALGPGPHRWGPCGGSWAQKFYQDGPGRGLGEEDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MWLKVGGLLRGTGGQLGQTVGWPCGALGPGPHRWGPCGGSWAQKFYQDGPGRGLGEEDIR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RAREARPRKTPRPQLSDRSRERKVPASRISRLANFGGLAVGLGLGVLAEMAKKSMPGGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RAREARPRKTPRPQLSDRSRERKVPASRISRLANFGGLAVGLGLGVLAEMAKKSMPGGRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QSDNSFISPQLQHIFERVRQSADFMPRWQMLRVLEEELGRDWQAKVASLEEVPFAAASIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QSDNSFISPQLQHIFERVRQSADFMPRWQMLRVLEEELGRDWQAKVASLEEVPFAAASIG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 QVHQGLLRDGTEVAVKIQYPGIAQSIQSDVQNLLAVLKMSAALPAGLFAEQSLQALQQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QVHQGLLRDGTEVAVKIQYPGIAQSIQSDVQNLLAVLKMSAALPAGLFAEQSLQALQQEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 AWECDYRREAACAQNFRQLLANDPFFRVPAVVKELCTTRVLGMELAGGVPLDQCQGLSQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AWECDYRREAACAQNFRQLLANDPFFRVPAVVKELCTTRVLGMELAGGVPLDQCQGLSQD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 LRNQICFQLLTLCLRELFEFRFMQTDPNWANFLYDASSHQVTLLDFGASREFGTEFTDHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LRNQICFQLLTLCLRELFEFRFMQTDPNWANFLYDASSHQVTLLDFGASREFGTEFTDHY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 IEVVKAAADGDRDCVLQKSRDLKFLTGFETKAFSDAHVEAVMILGEPFATQGPYDFGSGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IEVVKAAADGDRDCVLQKSRDLKFLTGFETKAFSDAHVEAVMILGEPFATQGPYDFGSGE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 TARRIQDLIPVLLRHRLCPPPEETYALHRKLAGAFLACAHLRAHIACRDLFQDTYHRYWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TARRIQDLIPVLLRHRLCPPPEETYALHRKLAGAFLACAHLRAHIACRDLFQDTYHRYWA
430 440 450 460 470 480
490 500
pF1KE3 SRQPDAATAGSLPTKGDSWVDPS
:::::::::::::::::::::::
CCDS46 SRQPDAATAGSLPTKGDSWVDPS
490 500
>>CCDS12562.1 COQ8B gene_id:79934|Hs108|chr19 (544 aa)
initn: 2586 init1: 2586 opt: 2587 Z-score: 2728.3 bits: 514.5 E(32554): 1.2e-145
Smith-Waterman score: 3302; 92.3% identity (92.3% similar) in 535 aa overlap (10-503:10-544)
10 20 30 40 50 60
pF1KE3 MWLKVGGLLRGTGGQLGQTVGWPCGALGPGPHRWGPCGGSWAQKFYQDGPGRGLGEEDIR
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MWLKVGGLLRGTGGQLGQTVGWPCGALGPGPHRWGPCGGSWAQKFYQDGPGRGLGEEDIR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RAREARPRKTPRPQLSDRSRERKVPASRISRLANFGGLAVGLGLGVLAEMAKKSMPGGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RAREARPRKTPRPQLSDRSRERKVPASRISRLANFGGLAVGLGLGVLAEMAKKSMPGGRL
70 80 90 100 110 120
130
pF1KE3 QS-----------------------------------------DNSFISPQLQHIFERVR
:: :::::::::::::::::
CCDS12 QSEGGSGLDSSPFLSEANAERIVQTLCTVRGAALKVGQMLSIQDNSFISPQLQHIFERVR
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE3 QSADFMPRWQMLRVLEEELGRDWQAKVASLEEVPFAAASIGQVHQGLLRDGTEVAVKIQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QSADFMPRWQMLRVLEEELGRDWQAKVASLEEVPFAAASIGQVHQGLLRDGTEVAVKIQY
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE3 PGIAQSIQSDVQNLLAVLKMSAALPAGLFAEQSLQALQQELAWECDYRREAACAQNFRQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGIAQSIQSDVQNLLAVLKMSAALPAGLFAEQSLQALQQELAWECDYRREAACAQNFRQL
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE3 LANDPFFRVPAVVKELCTTRVLGMELAGGVPLDQCQGLSQDLRNQICFQLLTLCLRELFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LANDPFFRVPAVVKELCTTRVLGMELAGGVPLDQCQGLSQDLRNQICFQLLTLCLRELFE
310 320 330 340 350 360
320 330 340 350 360 370
pF1KE3 FRFMQTDPNWANFLYDASSHQVTLLDFGASREFGTEFTDHYIEVVKAAADGDRDCVLQKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FRFMQTDPNWANFLYDASSHQVTLLDFGASREFGTEFTDHYIEVVKAAADGDRDCVLQKS
370 380 390 400 410 420
380 390 400 410 420 430
pF1KE3 RDLKFLTGFETKAFSDAHVEAVMILGEPFATQGPYDFGSGETARRIQDLIPVLLRHRLCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RDLKFLTGFETKAFSDAHVEAVMILGEPFATQGPYDFGSGETARRIQDLIPVLLRHRLCP
430 440 450 460 470 480
440 450 460 470 480 490
pF1KE3 PPEETYALHRKLAGAFLACAHLRAHIACRDLFQDTYHRYWASRQPDAATAGSLPTKGDSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PPEETYALHRKLAGAFLACAHLRAHIACRDLFQDTYHRYWASRQPDAATAGSLPTKGDSW
490 500 510 520 530 540
500
pF1KE3 VDPS
::::
CCDS12 VDPS
>>CCDS1557.1 COQ8A gene_id:56997|Hs108|chr1 (647 aa)
initn: 1740 init1: 1505 opt: 1518 Z-score: 1600.8 bits: 306.1 E(32554): 7.6e-83
Smith-Waterman score: 1718; 52.3% identity (76.1% similar) in 514 aa overlap (14-483:132-644)
10 20 30 40
pF1KE3 MWLKVGGLLRGTGGQLGQTVGWPCGALGPGPHRWGPCGGSWAQ
:: .. .: : : .:. : .
CCDS15 SAPPSLGHAHSEGPAPAYVASGPFREAGFPGQASSPLGRANGRLFANPRDSFSAMGFQRR
110 120 130 140 150 160
50 60 70 80 90
pF1KE3 KFYQD-GPGRGLGEEDIRRAREARPR---KTPRPQLSDRSRERKVPASRISRLANFGGLA
:.:: .: :: :::..::.:. : : . ::...::::::..::.:::::::::
CCDS15 FFHQDQSPVGGLTAEDIEKARQAKARPENKQHKQTLSEHARERKVPVTRIGRLANFGGLA
170 180 190 200 210 220
100 110 120
pF1KE3 VGLGLGVLAEMAKKSM----PGGR---LQS------------------------------
::::.:.:::.::::. :.:. : :
CCDS15 VGLGFGALAEVAKKSLRSEDPSGKKAVLGSSPFLSEANAERIVRTLCKVRGAALKLGQML
230 240 250 260 270 280
130 140 150 160 170
pF1KE3 ---DNSFISPQLQHIFERVRQSADFMPRWQMLRVLEEELGRDWQAKVASLEEVPFAAASI
:..::.:.: .::::::::::::: ::...:...:: .:. :. .:: :::::::
CCDS15 SIQDDAFINPHLAKIFERVRQSADFMPLKQMMKTLNNDLGPNWRDKLEYFEERPFAAASI
290 300 310 320 330 340
180 190 200 210 220 230
pF1KE3 GQVHQGLLRDGTEVAVKIQYPGIAQSIQSDVQNLLAVLKMSAALPAGLFAEQSLQALQQE
:::: . .. : :::.::::::.::::.:::.::.:::.:: :: ::: :. ...:..:
CCDS15 GQVHLARMKGGREVAMKIQYPGVAQSINSDVNNLMAVLNMSNMLPEGLFPEHLIDVLRRE
350 360 370 380 390 400
240 250 260 270 280 290
pF1KE3 LAWECDYRREAACAQNFRQLLANDPFFRVPAVVKELCTTRVLGMELAGGVPLDQCQGLSQ
:: ::::.::::::..::.:: . ::: :: .: :::. .:: ::..: :::: .::::
CCDS15 LALECDYQREAACARKFRDLLKGHPFFYVPEIVDELCSPHVLTTELVSGFPLDQAEGLSQ
410 420 430 440 450 460
300 310 320 330 340 350
pF1KE3 DLRNQICFQLLTLCLRELFEFRFMQTDPNWANFLYDASSHQVTLLDFGASREFGTEFTDH
..::.::...:.:::::::::.::::::::.::.:: ..:.:.::::::.::. :::
CCDS15 EIRNEICYNILVLCLRELFEFHFMQTDPNWSNFFYDPQQHKVALLDFGATREYDRSFTDL
470 480 490 500 510 520
360 370 380 390 400 410
pF1KE3 YIEVVKAAADGDRDCVLQKSRDLKFLTGFETKAFSDAHVEAVMILGEPFATQGPYDFGSG
::....:::: ::. : :: ..:::::.:.:.. :::..:..:::: ::.. :.:::.
CCDS15 YIQIIRAAADRDRETVRAKSIEMKFLTGYEVKVMEDAHLDAILILGEAFASDEPFDFGTQ
530 540 550 560 570 580
420 430 440 450 460 470
pF1KE3 ETARRIQDLIPVLLRHRLCPPPEETYALHRKLAGAFLACAHLRAHIACRDLFQDTYHRYW
:...:..::::.::::: :::::::.::::..:.:: :..:.:.. :. .:...: :
CCDS15 STTEKIHNLIPVMLRHRLVPPPEETYSLHRKMGGSFLICSKLKARFPCKAMFEEAYSNY-
590 600 610 620 630 640
480 490 500
pF1KE3 ASRQPDAATAGSLPTKGDSWVDPS
.::
CCDS15 CKRQAQQ
503 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:26:36 2016 done: Mon Nov 7 00:26:37 2016
Total Scan time: 2.970 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]