FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3639, 379 aa
  1>>>pF1KE3639 379 - 379 aa - 379 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6870+/-0.00127; mu= 17.5608+/- 0.076
 mean_var=241.3993+/-44.692, 0's: 0 Z-trim(110.5): 161  B-trim: 18 in 2/49
 Lambda= 0.082548
 statistics sampled from 11506 (11671) to 11506 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.359), width:  16
 Scan time:  2.530

The best scores are:                                      opt bits E(32554)
CCDS8971.1 WIF1 gene_id:11197|Hs108|chr12          ( 379) 2807 347.6 1.1e-95
CCDS47544.1 VWDE gene_id:221806|Hs108|chr7         (1590)  658 92.8 2.3e-18
CCDS83040.1 TENM2 gene_id:57451|Hs108|chr5         (2535)  489 73.0 3.3e-12


>>CCDS8971.1 WIF1 gene_id:11197|Hs108|chr12               (379 aa)
 initn: 2807 init1: 2807 opt: 2807  Z-score: 1831.6  bits: 347.6 E(32554): 1.1e-95
Smith-Waterman score: 2807; 99.7% identity (100.0% similar) in 379 aa overlap (1-379:1-379)

               10        20        30        40        50        60
pF1KE3 MARRSAFPAAALWLWSILLCLLALRAEAGPPQEESLYLWIDAHQARVLIGFEEDILIVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MARRSAFPAAALWLWSILLCLLALRAEAGPPQEESLYLWIDAHQARVLIGFEEDILIVSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GKMAPFTHDFRKAQQRMPAIPVNIHSMNFTWQAAGQAEYFYEFLSLRSLDKGIMADPTVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 GKMAPFTHDFRKAQQRMPAIPVNIHSMNFTWQAAGQAEYFYEFLSLRSLDKGIMADPTVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQA
       :::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS89 VPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILQTPQNAIFFKTCQQA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 ECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 ECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 CDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 CDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 QGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASLIHALRPAGAQLRQHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 QGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASLIHALRPAGAQLRQHT
              310       320       330       340       350       360

              370         
pF1KE3 PSLKKAEERRDPPESNYIW
       :::::::::::::::::::
CCDS89 PSLKKAEERRDPPESNYIW
              370         

>>CCDS47544.1 VWDE gene_id:221806|Hs108|chr7              (1590 aa)
 initn: 1262 init1: 658 opt: 658  Z-score: 443.2  bits: 92.8 E(32554): 2.3e-18
Smith-Waterman score: 658; 44.2% identity (67.5% similar) in 163 aa overlap (176-338:1356-1518)

         150       160       170       180       190       200     
pF1KE3 GVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFH
                                     ::.. .:   :..:: :    .: :: :: 
CCDS47 QTALCDPDCKNHGKCIKPNICQCLPGHGGATCDEEHCNPPCQHGGTCLAGNLCTCPYGFV
        1330      1340      1350      1360      1370      1380     

         210       220       230       240       250       260     
pF1KE3 GPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICP
       ::.::  .:. .: ::: :.:: .: : ::.:: .:. : :. .:.:::.:  :. :.::
CCDS47 GPRCETMVCNRHCENGGQCLTPDICQCKPGWYGPTCSTALCDPVCLNGGSCNKPNTCLCP
        1390      1400      1410      1420      1430      1440     

         270       280       290       300       310       320     
pF1KE3 PGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNK
        :. ::.:. . :  ::.:::.:. .. : : .:: :   .: .:.: :   : :  :. 
CCDS47 NGFFGEHCQNAFCHPPCKNGGHCMRNNVCVCREGYTGRRFQKSICDPTCMNGGKCVGPST
        1450      1460      1470      1480      1490      1500     

         330       340       350       360       370               
pF1KE3 CQCQEGWHGRHCNKRYEASLIHALRPAGAQLRQHTPSLKKAEERRDPPESNYIW      
       :.:  :: :..::                                               
CCDS47 CSCPSGWSGKRCNTPICLQKCKNGGECIAPSICHCPSSWEGVRCQIPICNPKCLYGGRCI
        1510      1520      1530      1540      1550      1560     

>>CCDS83040.1 TENM2 gene_id:57451|Hs108|chr5              (2535 aa)
 initn: 307 init1: 103 opt: 489  Z-score: 332.7  bits: 73.0 E(32554): 3.3e-12
Smith-Waterman score: 489; 40.1% identity (63.1% similar) in 157 aa overlap (186-337:413-564)

         160       170       180       190       200       210     
pF1KE3 VMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCT
                                     : . : : .   : :  :..: :::.. : 
CCDS83 GQYSKGTCQCYSGWKGAECDVPMNQCIDPSCGGHGSCIDGN-CVCSAGYKGEHCEEVDCL
            390       400       410       420        430       440 

          220       230       240         250         260       270
pF1KE3 -PRCMNGGLCVTPGFCICPPGFYGVNCD--KANCSTTCFNGGTCFYP--GKCICPPGLEG
        : : . :.::. : :.: ::. :.::.  ...:   : . :: . :  : : : :.  :
CCDS83 DPTCSSHGVCVN-GECLCSPGWGGLNCELARVQCPDQCSGHGT-YLPDTGLCSCDPNWMG
             450        460       470       480        490         

              280       290       300       310       320       330
pF1KE3 EQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQE
        .: .  :   : . : ::: . :.: .:. :  :.. ::.: :  ::::.. .::.:.:
CCDS83 PDCSVEVCSVDCGTHGVCIG-GACRCEEGWTGAACDQRVCHPRCIEHGTCKD-GKCECRE
     500       510        520       530       540       550        

              340       350       360       370                    
pF1KE3 GWHGRHCNKRYEASLIHALRPAGAQLRQHTPSLKKAEERRDPPESNYIW           
       ::.:.::                                                     
CCDS83 GWNGEHCTIGRQTAGTETDGCPDLCNGNGRCTLGQNSWQCVCQTGWRGPGCNVAMETSCA
       560       570       580       590       600       610       




379 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:58:00 2016 done: Mon Nov  7 00:58:01 2016
 Total Scan time:  2.530 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]