FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3635, 462 aa
  1>>>pF1KE3635 462 - 462 aa - 462 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6731+/-0.000828; mu= 15.0841+/- 0.050
 mean_var=61.7794+/-12.627, 0's: 0 Z-trim(105.9): 21  B-trim: 0 in 0/49
 Lambda= 0.163174
 statistics sampled from 8689 (8698) to 8689 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.267), width:  16
 Scan time:  3.030

The best scores are:                                      opt bits E(32554)
CCDS34386.1 GTF2H4 gene_id:2968|Hs108|chr6         ( 462) 3049 726.5 1.4e-209


>>CCDS34386.1 GTF2H4 gene_id:2968|Hs108|chr6              (462 aa)
 initn: 3049 init1: 3049 opt: 3049  Z-score: 3876.0  bits: 726.5 E(32554): 1.4e-209
Smith-Waterman score: 3049; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462)

               10        20        30        40        50        60
pF1KE3 MESTPSRGLNRVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MESTPSRGLNRVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRML
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSSGVSGAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSSGVSGAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 VHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGIT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 AQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFEL
              370       380       390       400       410       420

              430       440       450       460  
pF1KE3 LLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHSS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS34 LLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHSS
              430       440       450       460  




462 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:17:38 2016 done: Sun Nov  6 23:17:38 2016
 Total Scan time:  3.030 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]