Result of FASTA (omim) for
pFN21AE3634
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3634, 117 aa
1>>>pF1KE3634 117 - 117 aa - 117 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9151+/-0.000313; mu= 11.7905+/- 0.019
mean_var=52.9176+/-10.763, 0's: 0 Z-trim(115.1): 13 B-trim: 1294 in 1/51
Lambda= 0.176309
statistics sampled from 25325 (25338) to 25325 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.297), width: 16
Scan time: 4.560
The best scores are: opt bits E(85289)
NP_006225 (OMIM: 604150) DNA-directed RNA polymera ( 117) 757 199.9 7.7e-52
XP_016867842 (OMIM: 604150) PREDICTED: DNA-directe ( 116) 739 195.3 1.8e-50
XP_005250509 (OMIM: 604150) PREDICTED: DNA-directe ( 159) 695 184.2 5.6e-47
NP_116581 (OMIM: 609881) DNA-directed RNA polymera ( 115) 666 176.8 7e-45
NP_057056 (OMIM: 613715,613717) DNA-directed RNA p ( 133) 214 61.8 3.2e-10
XP_005266469 (OMIM: 613715,613717) PREDICTED: DNA- ( 133) 214 61.8 3.2e-10
>>NP_006225 (OMIM: 604150) DNA-directed RNA polymerase I (117 aa)
initn: 757 init1: 757 opt: 757 Z-score: 1051.7 bits: 199.9 E(85289): 7.7e-52
Smith-Waterman score: 757; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)
10 20 30 40 50 60
pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
70 80 90 100 110
>>XP_016867842 (OMIM: 604150) PREDICTED: DNA-directed RN (116 aa)
initn: 643 init1: 643 opt: 739 Z-score: 1027.0 bits: 195.3 E(85289): 1.8e-50
Smith-Waterman score: 739; 99.1% identity (99.1% similar) in 117 aa overlap (1-117:1-116)
10 20 30 40 50 60
pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_016 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
10 20 30 40 50
70 80 90 100 110
pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
60 70 80 90 100 110
>>XP_005250509 (OMIM: 604150) PREDICTED: DNA-directed RN (159 aa)
initn: 695 init1: 695 opt: 695 Z-score: 964.4 bits: 184.2 E(85289): 5.6e-47
Smith-Waterman score: 695; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVRAGPGGADGVGWT
70 80 90 100 110 120
XP_005 LARVPRPGTALACFFGGPGGEAAVMEEQGLPPQAPGHVD
130 140 150
>>NP_116581 (OMIM: 609881) DNA-directed RNA polymerase I (115 aa)
initn: 681 init1: 569 opt: 666 Z-score: 926.7 bits: 176.8 E(85289): 7e-45
Smith-Waterman score: 666; 95.4% identity (98.2% similar) in 109 aa overlap (1-109:1-108)
10 20 30 40 50 60
pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
::::::::::::::::: ::::::::::.:::::::::::::::::::::::::::::::
NP_116 MNAPPAFESFLLFEGEK-ITINKDTKVPKACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
10 20 30 40 50
70 80 90 100 110
pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
::::::::::::::::::::::::::::::::::::::::::::::. .
NP_116 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP
60 70 80 90 100 110
>>NP_057056 (OMIM: 613715,613717) DNA-directed RNA polym (133 aa)
initn: 206 init1: 190 opt: 214 Z-score: 304.4 bits: 61.8 E(85289): 3.2e-10
Smith-Waterman score: 214; 32.7% identity (68.3% similar) in 104 aa overlap (14-114:20-123)
10 20 30 40 50
pF1KE3 MNAPPAFESFLLFEGEKKITIN--KDTKVPNACL-FTINKEDHTLGNIIKSQLL
:::.: ... . . . :. :....::::::: .. ...
NP_057 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 KDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKD
:.:.: : :: . :: : :: .:.:: : : ....:.. . . ..:...:::
NP_057 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
70 80 90 100 110 120
pF1KE3 KQEGIE
..
NP_057 YKDQKASRNESTF
130
>>XP_005266469 (OMIM: 613715,613717) PREDICTED: DNA-dire (133 aa)
initn: 206 init1: 190 opt: 214 Z-score: 304.4 bits: 61.8 E(85289): 3.2e-10
Smith-Waterman score: 214; 32.7% identity (68.3% similar) in 104 aa overlap (14-114:20-123)
10 20 30 40 50
pF1KE3 MNAPPAFESFLLFEGEKKITIN--KDTKVPNACL-FTINKEDHTLGNIIKSQLL
:::.: ... . . . :. :....::::::: .. ...
XP_005 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 KDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKD
:.:.: : :: . :: : :: .:.:: : : ....:.. . . ..:...:::
XP_005 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
70 80 90 100 110 120
pF1KE3 KQEGIE
..
XP_005 YKDQKASRNESTF
130
117 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:40:23 2016 done: Sun Nov 6 22:40:24 2016
Total Scan time: 4.560 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]