FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3634, 117 aa
  1>>>pF1KE3634 117 - 117 aa - 117 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1731+/-0.000681; mu= 10.2106+/- 0.041
 mean_var=52.4030+/-10.509, 0's: 0 Z-trim(107.8): 17  B-trim: 0 in 0/52
 Lambda= 0.177172
 statistics sampled from 9820 (9829) to 9820 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.302), width:  16
 Scan time:  1.450

The best scores are:                                      opt bits E(32554)
CCDS5724.1 POLR2J gene_id:5439|Hs108|chr7          ( 117)  757 200.9 1.5e-52
CCDS47673.1 POLR2J3 gene_id:548644|Hs108|chr7      ( 115)  673 179.4 4.3e-46
CCDS43627.1 POLR2J2 gene_id:246721|Hs108|chr7      ( 115)  666 177.6 1.5e-45


>>CCDS5724.1 POLR2J gene_id:5439|Hs108|chr7               (117 aa)
 initn: 757 init1: 757 opt: 757  Z-score: 1056.9  bits: 200.9 E(32554): 1.5e-52
Smith-Waterman score: 757; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
               10        20        30        40        50        60

               70        80        90       100       110       
pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
               70        80        90       100       110       

>>CCDS47673.1 POLR2J3 gene_id:548644|Hs108|chr7           (115 aa)
 initn: 688 init1: 576 opt: 673  Z-score: 941.0  bits: 179.4 E(32554): 4.3e-46
Smith-Waterman score: 673; 96.3% identity (98.2% similar) in 109 aa overlap (1-109:1-108)

               10        20        30        40        50        60
pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS47 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
               10         20        30        40        50         

               70        80        90       100       110       
pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
       ::::::::::::::::::::::::::::::::::::::::::::::. .        
CCDS47 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP 
      60        70        80        90       100       110      

>>CCDS43627.1 POLR2J2 gene_id:246721|Hs108|chr7           (115 aa)
 initn: 681 init1: 569 opt: 666  Z-score: 931.3  bits: 177.6 E(32554): 1.5e-45
Smith-Waterman score: 666; 95.4% identity (98.2% similar) in 109 aa overlap (1-109:1-108)

               10        20        30        40        50        60
pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
       ::::::::::::::::: ::::::::::.:::::::::::::::::::::::::::::::
CCDS43 MNAPPAFESFLLFEGEK-ITINKDTKVPKACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
               10         20        30        40        50         

               70        80        90       100       110       
pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
       ::::::::::::::::::::::::::::::::::::::::::::::. .        
CCDS43 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP 
      60        70        80        90       100       110      




117 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:40:22 2016 done: Sun Nov  6 22:40:23 2016
 Total Scan time:  1.450 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]