Result of FASTA (omim) for
pFN21AE3632
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3632, 314 aa
1>>>pF1KE3632 314 - 314 aa - 314 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8451+/-0.000448; mu= 17.9495+/- 0.027
mean_var=62.0333+/-13.228, 0's: 0 Z-trim(109.2): 39 B-trim: 0 in 0/50
Lambda= 0.162840
statistics sampled from 17368 (17403) to 17368 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.549), E-opt: 0.2 (0.204), width: 16
Scan time: 6.530
The best scores are: opt bits E(85289)
NP_073563 (OMIM: 605512) elongation of very long c ( 314) 2178 520.6 1.6e-147
NP_060240 (OMIM: 611814) elongation of very long c ( 296) 890 218.0 1.9e-56
XP_011513019 (OMIM: 611814) PREDICTED: elongation ( 297) 890 218.0 1.9e-56
XP_011513018 (OMIM: 611814) PREDICTED: elongation ( 326) 890 218.1 2e-56
NP_001288785 (OMIM: 611805,615957) elongation of v ( 299) 845 207.5 2.8e-53
NP_068586 (OMIM: 611805,615957) elongation of very ( 299) 845 207.5 2.8e-53
XP_016865374 (OMIM: 614451) PREDICTED: elongation ( 281) 821 201.8 1.3e-51
NP_079206 (OMIM: 614451) elongation of very long c ( 281) 821 201.8 1.3e-51
XP_005248663 (OMIM: 614451) PREDICTED: elongation ( 281) 821 201.8 1.3e-51
NP_001098028 (OMIM: 614451) elongation of very lon ( 281) 821 201.8 1.3e-51
XP_006714758 (OMIM: 614451) PREDICTED: elongation ( 281) 821 201.8 1.3e-51
XP_011541953 (OMIM: 614451) PREDICTED: elongation ( 281) 821 201.8 1.3e-51
XP_016865375 (OMIM: 614451) PREDICTED: elongation ( 268) 804 197.8 2.1e-50
XP_016865376 (OMIM: 614451) PREDICTED: elongation ( 268) 804 197.8 2.1e-50
XP_005248664 (OMIM: 614451) PREDICTED: elongation ( 268) 804 197.8 2.1e-50
NP_001284546 (OMIM: 614451) elongation of very lon ( 268) 804 197.8 2.1e-50
NP_001243328 (OMIM: 611813) elongation of very lon ( 279) 751 185.3 1.2e-46
NP_073732 (OMIM: 611813) elongation of very long c ( 279) 751 185.3 1.2e-46
NP_001284547 (OMIM: 614451) elongation of very lon ( 194) 622 154.9 1.2e-37
NP_001229757 (OMIM: 611805,615957) elongation of v ( 326) 614 153.2 6.6e-37
NP_001243331 (OMIM: 611813) elongation of very lon ( 198) 542 136.1 5.5e-32
NP_001229759 (OMIM: 611805,615957) elongation of v ( 262) 534 134.4 2.5e-31
NP_001243330 (OMIM: 611813) elongation of very lon ( 252) 494 124.9 1.7e-28
NP_689523 (OMIM: 611815) elongation of very long c ( 270) 307 81.0 2.9e-15
XP_011538547 (OMIM: 611815) PREDICTED: elongation ( 270) 307 81.0 2.9e-15
NP_001124193 (OMIM: 611546) elongation of very lon ( 265) 295 78.2 2e-14
XP_011530536 (OMIM: 611546) PREDICTED: elongation ( 265) 295 78.2 2e-14
NP_076995 (OMIM: 611546) elongation of very long c ( 265) 295 78.2 2e-14
XP_011530535 (OMIM: 611546) PREDICTED: elongation ( 265) 295 78.2 2e-14
XP_016866474 (OMIM: 611814) PREDICTED: elongation ( 150) 241 65.3 8.6e-11
XP_011530537 (OMIM: 611546) PREDICTED: elongation ( 181) 226 61.9 1.1e-09
>>NP_073563 (OMIM: 605512) elongation of very long chain (314 aa)
initn: 2178 init1: 2178 opt: 2178 Z-score: 2769.6 bits: 520.6 E(85289): 1.6e-147
Smith-Waterman score: 2178; 99.7% identity (100.0% similar) in 314 aa overlap (1-314:1-314)
10 20 30 40 50 60
pF1KE3 MGLLDSEPGSVLNVVSTALNDTVEFYRWTWSIADKRVENWPLMRSPWPTLSISTLYLLFV
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
NP_073 MGLLDSEPGSVLNVVSTALNDTVEFYRWTWSIADKRVENWPLMQSPWPTLSISTLYLLFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 WLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 WLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 EVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 EVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 AFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 AFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYTD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 CPFPKWMHWALIAYAISFIFLFLNFYIRTYKEPKKPKAGKTAMNGISANGVSKSEKQLMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 CPFPKWMHWALIAYAISFIFLFLNFYIRTYKEPKKPKAGKTAMNGISANGVSKSEKQLMI
250 260 270 280 290 300
310
pF1KE3 ENGKKQKNGKAKGD
::::::::::::::
NP_073 ENGKKQKNGKAKGD
310
>>NP_060240 (OMIM: 611814) elongation of very long chain (296 aa)
initn: 674 init1: 438 opt: 890 Z-score: 1134.6 bits: 218.0 E(85289): 1.9e-56
Smith-Waterman score: 898; 44.4% identity (74.4% similar) in 293 aa overlap (18-297:6-296)
10 20 30 40 50
pF1KE3 MGLLDSEPGSVLNVVSTALNDTVE-FYRWTWSIADKRVENWPLMRSPWPTLSISTLYLLF
:..: .. : .. :.::..: .. : ::. ....:::
NP_060 MEHLKAFDDEINAFLDNMFGPRDSRVRGWFMLDSYLPTFFLTVMYLLS
10 20 30 40
60 70 80 90 100 110
pF1KE3 VWLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNV
.::: :.::.: ...: .: .::.:..::. ... ::.......::. ::.. : .
NP_060 IWLGNKYMKNRPALSLRGILTLYNLGITLLSAYMLAELILSTWEGGYNLQCQDLT-SAGE
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 HEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGG
..:.: .::::. ::.::.:::.::.::::..:..::::::: .::..:: ..:. :
NP_060 ADIRVAKVLWWYYFSKSVEFLDTIFFVLRKKTSQITFLHVYHHASMFNIWWCVLNWIPCG
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 QAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYT
:.::: ::::::..:::::::..: : ..::::::.:::. ::.:: .:: :: ..
NP_060 QSFFGPTLNSFIHILMYSYYGLSVF-PSMHKYLWWKKYLTQAQLVQFVLTITHTMSAVVK
170 180 190 200 210 220
240 250 260 270 280
pF1KE3 DCPFPKWMHWALIAYAISFIFLFLNFYIRTY-KEPKK-----PKAGKTAMNGIS------
: :: .: .....::::::..:: :.: : : ::: . ::.:
NP_060 PCGFPFGCLIFQSSYMLTLVILFLNFYVQTYRKKPMKKDMQEPPAGKEVKNGFSKAYFTA
230 240 250 260 270 280
290 300 310
pF1KE3 ANGVSKSEKQLMIENGKKQKNGKAKGD
:::: ... :
NP_060 ANGVMNKKAQ
290
>>XP_011513019 (OMIM: 611814) PREDICTED: elongation of v (297 aa)
initn: 674 init1: 438 opt: 890 Z-score: 1134.6 bits: 218.0 E(85289): 1.9e-56
Smith-Waterman score: 898; 44.4% identity (74.4% similar) in 293 aa overlap (18-297:7-297)
10 20 30 40 50
pF1KE3 MGLLDSEPGSVLNVVSTALNDTVE-FYRWTWSIADKRVENWPLMRSPWPTLSISTLYLLF
:..: .. : .. :.::..: .. : ::. ....:::
XP_011 MMEHLKAFDDEINAFLDNMFGPRDSRVRGWFMLDSYLPTFFLTVMYLLS
10 20 30 40
60 70 80 90 100 110
pF1KE3 VWLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNV
.::: :.::.: ...: .: .::.:..::. ... ::.......::. ::.. : .
XP_011 IWLGNKYMKNRPALSLRGILTLYNLGITLLSAYMLAELILSTWEGGYNLQCQDLT-SAGE
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 HEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGG
..:.: .::::. ::.::.:::.::.::::..:..::::::: .::..:: ..:. :
XP_011 ADIRVAKVLWWYYFSKSVEFLDTIFFVLRKKTSQITFLHVYHHASMFNIWWCVLNWIPCG
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 QAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYT
:.::: ::::::..:::::::..: : ..::::::.:::. ::.:: .:: :: ..
XP_011 QSFFGPTLNSFIHILMYSYYGLSVF-PSMHKYLWWKKYLTQAQLVQFVLTITHTMSAVVK
170 180 190 200 210 220
240 250 260 270 280
pF1KE3 DCPFPKWMHWALIAYAISFIFLFLNFYIRTY-KEPKK-----PKAGKTAMNGIS------
: :: .: .....::::::..:: :.: : : ::: . ::.:
XP_011 PCGFPFGCLIFQSSYMLTLVILFLNFYVQTYRKKPMKKDMQEPPAGKEVKNGFSKAYFTA
230 240 250 260 270 280
290 300 310
pF1KE3 ANGVSKSEKQLMIENGKKQKNGKAKGD
:::: ... :
XP_011 ANGVMNKKAQ
290
>>XP_011513018 (OMIM: 611814) PREDICTED: elongation of v (326 aa)
initn: 674 init1: 438 opt: 890 Z-score: 1134.0 bits: 218.1 E(85289): 2e-56
Smith-Waterman score: 898; 44.4% identity (74.4% similar) in 293 aa overlap (18-297:36-326)
10 20 30 40
pF1KE3 MGLLDSEPGSVLNVVSTALNDTVE-FYRWTWSIADKRVENWPLMRSP
:..: .. : .. :.::..: .. :
XP_011 QLPEAVMLSSHTVRDQPAGPTFLEILEHLKAFDDEINAFLDNMFGPRDSRVRGWFMLDSY
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 WPTLSISTLYLLFVWLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGY
::. ....::: .::: :.::.: ...: .: .::.:..::. ... ::.......::
XP_011 LPTFFLTVMYLLSIWLGNKYMKNRPALSLRGILTLYNLGITLLSAYMLAELILSTWEGGY
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 SYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMF
. ::.. : . ..:.: .::::. ::.::.:::.::.::::..:..::::::: .::
XP_011 NLQCQDLT-SAGEADIRVAKVLWWYYFSKSVEFLDTIFFVLRKKTSQITFLHVYHHASMF
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 TLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQF
..:: ..:. ::.::: ::::::..:::::::..: : ..::::::.:::. ::.::
XP_011 NIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSVF-PSMHKYLWWKKYLTQAQLVQF
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE3 HVTIGHTALSLYTDCPFPKWMHWALIAYAISFIFLFLNFYIRTY-KEPKK-----PKAGK
.:: :: .. : :: .: .....::::::..:: :.: : : :::
XP_011 VLTITHTMSAVVKPCGFPFGCLIFQSSYMLTLVILFLNFYVQTYRKKPMKKDMQEPPAGK
250 260 270 280 290 300
290 300 310
pF1KE3 TAMNGIS------ANGVSKSEKQLMIENGKKQKNGKAKGD
. ::.: :::: ... :
XP_011 EVKNGFSKAYFTAANGVMNKKAQ
310 320
>>NP_001288785 (OMIM: 611805,615957) elongation of very (299 aa)
initn: 861 init1: 377 opt: 845 Z-score: 1077.4 bits: 207.5 E(85289): 2.8e-53
Smith-Waterman score: 845; 44.6% identity (75.4% similar) in 280 aa overlap (34-307:20-294)
10 20 30 40 50 60
pF1KE3 LDSEPGSVLNVVSTALNDTVEFYRWTWSIADKRVENWPLMRSPWPTLSISTLYLLFVWLG
: ::..: :. . ::. :..:::.::::
NP_001 MEHFDASLSTYFKALLGPRDTRVKGWFLLDNYIPTFICSVIYLLIVWLG
10 20 30 40
70 80 90 100 110 120
pF1KE3 PKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVHEVR
::.:....::. : .:..::.:..::.:..: :: : ... :...::.. ... ...
NP_001 PKYMRNKQPFSCRGILVVYNLGLTLLSLYMFCELVTGVWEGKYNFFCQGTRTAGE-SDMK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 IAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFF
: .::::. :: .:..:: ::::::.:.:.. :::::: .:...::. ..:: :...:
NP_001 IIRVLWWYYFSKLIEFMDTFFFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSYF
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 GAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYTDCPF
:: :::::::.:::::::.. : .. :::::.:.:. ::.:: .:: .:. .. : :
NP_001 GATLNSFIHVLMYSYYGLSSV-PSMRPYLWWKKYITQGQLLQFVLTIIQTSCGVIWPCTF
170 180 190 200 210 220
250 260 270 280 290
pF1KE3 P-KWMHWALIAYAISFIFLFLNFYIRTYKEP---KKPKAGKTAMNGISA--NGVSKSEKQ
: :... :.: ::.: :: ::::.::.. .. : .:: : :: ..: .
NP_001 PLGWLYFQ-IGYMISLIALFTNFYIQTYNKKGASRRKDHLKDHQNGSMAAVNGHTNSFSP
230 240 250 260 270 280
300 310
pF1KE3 LMIENGKKQKNGKAKGD
: ::. : .
NP_001 L--ENNVKPRKLRKD
290
>>NP_068586 (OMIM: 611805,615957) elongation of very lon (299 aa)
initn: 861 init1: 377 opt: 845 Z-score: 1077.4 bits: 207.5 E(85289): 2.8e-53
Smith-Waterman score: 845; 44.6% identity (75.4% similar) in 280 aa overlap (34-307:20-294)
10 20 30 40 50 60
pF1KE3 LDSEPGSVLNVVSTALNDTVEFYRWTWSIADKRVENWPLMRSPWPTLSISTLYLLFVWLG
: ::..: :. . ::. :..:::.::::
NP_068 MEHFDASLSTYFKALLGPRDTRVKGWFLLDNYIPTFICSVIYLLIVWLG
10 20 30 40
70 80 90 100 110 120
pF1KE3 PKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVHEVR
::.:....::. : .:..::.:..::.:..: :: : ... :...::.. ... ...
NP_068 PKYMRNKQPFSCRGILVVYNLGLTLLSLYMFCELVTGVWEGKYNFFCQGTRTAGE-SDMK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 IAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFF
: .::::. :: .:..:: ::::::.:.:.. :::::: .:...::. ..:: :...:
NP_068 IIRVLWWYYFSKLIEFMDTFFFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSYF
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 GAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYTDCPF
:: :::::::.:::::::.. : .. :::::.:.:. ::.:: .:: .:. .. : :
NP_068 GATLNSFIHVLMYSYYGLSSV-PSMRPYLWWKKYITQGQLLQFVLTIIQTSCGVIWPCTF
170 180 190 200 210 220
250 260 270 280 290
pF1KE3 P-KWMHWALIAYAISFIFLFLNFYIRTYKEP---KKPKAGKTAMNGISA--NGVSKSEKQ
: :... :.: ::.: :: ::::.::.. .. : .:: : :: ..: .
NP_068 PLGWLYFQ-IGYMISLIALFTNFYIQTYNKKGASRRKDHLKDHQNGSMAAVNGHTNSFSP
230 240 250 260 270 280
300 310
pF1KE3 LMIENGKKQKNGKAKGD
: ::. : .
NP_068 L--ENNVKPRKLRKD
290
>>XP_016865374 (OMIM: 614451) PREDICTED: elongation of v (281 aa)
initn: 832 init1: 710 opt: 821 Z-score: 1047.3 bits: 201.8 E(85289): 1.3e-51
Smith-Waterman score: 821; 45.8% identity (71.1% similar) in 273 aa overlap (22-289:10-278)
10 20 30 40 50
pF1KE3 MGLLDSEPGSVLNVVSTALNDTVEFY-RWTWSIADKRVENWPLMRSPWPTLSISTLYLLF
::..: : . :: :::.: :: :: : . .:. :
XP_016 MAFSDLTSRTVHLYDNWIKD-ADPRVEDWLLMSSPLPQTILLGFYVYF
10 20 30 40
60 70 80 90 100 110
pF1KE3 VW-LGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNN
: :::: :..:.::... ..: ::: .::..... :. :.... :::. :. :::: .
XP_016 VTSLGPKLMENRKPFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRS
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 VHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAG
.:.: . : :. :: .: :::.::.:::::.::.::::.:: : ::.:.:..::
XP_016 PTALRMARTCWLYYFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAG
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 GQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLY
: . : : ::. .::.:::::::.:.:: :::::::.::: :::.:: .. : . ..
XP_016 GLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFF
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE3 T-DCP--FPKWMHWALIAYAISFIFLFLNFYIRTYKEPKKPKAGKTAMNGISANGVSKSE
:: :: . ...:.. :..:::.:. :.: : . ::. :: :
XP_016 MEDCKYQFPVFAC-IIMSYSFMFLLLFLHFWYRAY--TKGQRLPKTVKNGTCKNKDN
230 240 250 260 270 280
300 310
pF1KE3 KQLMIENGKKQKNGKAKGD
>>NP_079206 (OMIM: 614451) elongation of very long chain (281 aa)
initn: 832 init1: 710 opt: 821 Z-score: 1047.3 bits: 201.8 E(85289): 1.3e-51
Smith-Waterman score: 821; 45.8% identity (71.1% similar) in 273 aa overlap (22-289:10-278)
10 20 30 40 50
pF1KE3 MGLLDSEPGSVLNVVSTALNDTVEFY-RWTWSIADKRVENWPLMRSPWPTLSISTLYLLF
::..: : . :: :::.: :: :: : . .:. :
NP_079 MAFSDLTSRTVHLYDNWIKD-ADPRVEDWLLMSSPLPQTILLGFYVYF
10 20 30 40
60 70 80 90 100 110
pF1KE3 VW-LGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNN
: :::: :..:.::... ..: ::: .::..... :. :.... :::. :. :::: .
NP_079 VTSLGPKLMENRKPFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRS
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 VHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAG
.:.: . : :. :: .: :::.::.:::::.::.::::.:: : ::.:.:..::
NP_079 PTALRMARTCWLYYFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAG
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 GQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLY
: . : : ::. .::.:::::::.:.:: :::::::.::: :::.:: .. : . ..
NP_079 GLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFF
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE3 T-DCP--FPKWMHWALIAYAISFIFLFLNFYIRTYKEPKKPKAGKTAMNGISANGVSKSE
:: :: . ...:.. :..:::.:. :.: : . ::. :: :
NP_079 MEDCKYQFPVFAC-IIMSYSFMFLLLFLHFWYRAY--TKGQRLPKTVKNGTCKNKDN
230 240 250 260 270 280
300 310
pF1KE3 KQLMIENGKKQKNGKAKGD
>>XP_005248663 (OMIM: 614451) PREDICTED: elongation of v (281 aa)
initn: 832 init1: 710 opt: 821 Z-score: 1047.3 bits: 201.8 E(85289): 1.3e-51
Smith-Waterman score: 821; 45.8% identity (71.1% similar) in 273 aa overlap (22-289:10-278)
10 20 30 40 50
pF1KE3 MGLLDSEPGSVLNVVSTALNDTVEFY-RWTWSIADKRVENWPLMRSPWPTLSISTLYLLF
::..: : . :: :::.: :: :: : . .:. :
XP_005 MAFSDLTSRTVHLYDNWIKD-ADPRVEDWLLMSSPLPQTILLGFYVYF
10 20 30 40
60 70 80 90 100 110
pF1KE3 VW-LGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNN
: :::: :..:.::... ..: ::: .::..... :. :.... :::. :. :::: .
XP_005 VTSLGPKLMENRKPFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRS
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 VHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAG
.:.: . : :. :: .: :::.::.:::::.::.::::.:: : ::.:.:..::
XP_005 PTALRMARTCWLYYFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAG
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 GQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLY
: . : : ::. .::.:::::::.:.:: :::::::.::: :::.:: .. : . ..
XP_005 GLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFF
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE3 T-DCP--FPKWMHWALIAYAISFIFLFLNFYIRTYKEPKKPKAGKTAMNGISANGVSKSE
:: :: . ...:.. :..:::.:. :.: : . ::. :: :
XP_005 MEDCKYQFPVFAC-IIMSYSFMFLLLFLHFWYRAY--TKGQRLPKTVKNGTCKNKDN
230 240 250 260 270 280
300 310
pF1KE3 KQLMIENGKKQKNGKAKGD
>>NP_001098028 (OMIM: 614451) elongation of very long ch (281 aa)
initn: 832 init1: 710 opt: 821 Z-score: 1047.3 bits: 201.8 E(85289): 1.3e-51
Smith-Waterman score: 821; 45.8% identity (71.1% similar) in 273 aa overlap (22-289:10-278)
10 20 30 40 50
pF1KE3 MGLLDSEPGSVLNVVSTALNDTVEFY-RWTWSIADKRVENWPLMRSPWPTLSISTLYLLF
::..: : . :: :::.: :: :: : . .:. :
NP_001 MAFSDLTSRTVHLYDNWIKD-ADPRVEDWLLMSSPLPQTILLGFYVYF
10 20 30 40
60 70 80 90 100 110
pF1KE3 VW-LGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNN
: :::: :..:.::... ..: ::: .::..... :. :.... :::. :. :::: .
NP_001 VTSLGPKLMENRKPFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRS
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 VHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAG
.:.: . : :. :: .: :::.::.:::::.::.::::.:: : ::.:.:..::
NP_001 PTALRMARTCWLYYFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAG
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 GQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLY
: . : : ::. .::.:::::::.:.:: :::::::.::: :::.:: .. : . ..
NP_001 GLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFF
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE3 T-DCP--FPKWMHWALIAYAISFIFLFLNFYIRTYKEPKKPKAGKTAMNGISANGVSKSE
:: :: . ...:.. :..:::.:. :.: : . ::. :: :
NP_001 MEDCKYQFPVFAC-IIMSYSFMFLLLFLHFWYRAY--TKGQRLPKTVKNGTCKNKDN
230 240 250 260 270 280
300 310
pF1KE3 KQLMIENGKKQKNGKAKGD
314 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 17:38:10 2016 done: Mon Nov 7 17:38:11 2016
Total Scan time: 6.530 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]