FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3627, 114 aa
  1>>>pF1KE3627 114 - 114 aa - 114 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8355+/-0.000553; mu= 12.1680+/- 0.033
 mean_var=50.9075+/-10.110, 0's: 0 Z-trim(111.3): 6  B-trim: 0 in 0/52
 Lambda= 0.179756
 statistics sampled from 12265 (12269) to 12265 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.377), width:  16
 Scan time:  1.620

The best scores are:                                      opt bits E(32554)
CCDS9941.1 TCL1A gene_id:8115|Hs108|chr14          ( 114)  800 214.3 1.3e-56
CCDS44027.1 MTCP1 gene_id:4515|Hs108|chrX          ( 107)  291 82.3 6.8e-17


>>CCDS9941.1 TCL1A gene_id:8115|Hs108|chr14               (114 aa)
 initn: 800 init1: 800 opt: 800  Z-score: 1129.7  bits: 214.3 E(32554): 1.3e-56
Smith-Waterman score: 800; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE3 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE3 PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
               70        80        90       100       110    

>>CCDS44027.1 MTCP1 gene_id:4515|Hs108|chrX               (107 aa)
 initn: 216 init1: 216 opt: 291  Z-score: 416.7  bits: 82.3 E(32554): 6.8e-17
Smith-Waterman score: 291; 40.2% identity (71.0% similar) in 107 aa overlap (8-114:3-107)

               10        20        30        40        50        60
pF1KE3 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
              :: :   ::.::. .. .: :: :..:. .. :  . :. ::  .. .: :: 
CCDS44      MAGEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARV--QQIQVPLGD
                    10        20        30        40          50   

               70        80        90       100       110    
pF1KE3 PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
          :...  : ::.::::::. :: ...: .:.. .:. . ::...::.:::::
CCDS44 AARPSHLLTSQLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPDD
            60        70        80        90       100       




114 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:13:53 2016 done: Sun Nov  6 20:13:53 2016
 Total Scan time:  1.620 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]