FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3625, 454 aa
  1>>>pF1KE3625 454 - 454 aa - 454 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5388+/-0.00126; mu= 10.7863+/- 0.074
 mean_var=110.1228+/-23.792, 0's: 0 Z-trim(103.3): 146  B-trim: 0 in 0/50
 Lambda= 0.122218
 statistics sampled from 7209 (7367) to 7209 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.226), width:  16
 Scan time:  2.550

The best scores are:                                      opt bits E(32554)
CCDS43872.1 FBXW2 gene_id:26190|Hs108|chr9         ( 454) 3081 554.9  6e-158


>>CCDS43872.1 FBXW2 gene_id:26190|Hs108|chr9              (454 aa)
 initn: 3081 init1: 3081 opt: 3081  Z-score: 2949.2  bits: 554.9 E(32554): 6e-158
Smith-Waterman score: 3081; 100.0% identity (100.0% similar) in 454 aa overlap (1-454:1-454)

               10        20        30        40        50        60
pF1KE3 MERKDFETWLDNISVTFLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MERKDFETWLDNISVTFLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 PLELSFYLLKWLDPQTLLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PLELSFYLLKWLDPQTLLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KVYLKAILRMKQLEDHEAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KVYLKAILRMKQLEDHEAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 VYGIQTHTCAAVKFDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFSVDYNDELDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VYGIQTHTCAAVKFDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFSVDYNDELDI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 LVSGSADFTVKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPGDYILLSADKYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LVSGSADFTVKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPGDYILLSADKYE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 IKIWPIGREINCKCLKTLSVSEDRSICLQPRLHFDGKYIVCSSALGLYQWDFASYDILRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IKIWPIGREINCKCLKTLSVSEDRSICLQPRLHFDGKYIVCSSALGLYQWDFASYDILRV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 IKTPEIANLALLGFGDIFALLFDNRYLYIMDLRTESLISRWPLPEYRKSKRGSSFLAGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IKTPEIANLALLGFGDIFALLFDNRYLYIMDLRTESLISRWPLPEYRKSKRGSSFLAGEA
              370       380       390       400       410       420

              430       440       450    
pF1KE3 SWLNGLDGHNDTGLVFATSMPDHSIHLVLWKEHG
       ::::::::::::::::::::::::::::::::::
CCDS43 SWLNGLDGHNDTGLVFATSMPDHSIHLVLWKEHG
              430       440       450    




454 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:45:57 2016 done: Sun Nov  6 22:45:58 2016
 Total Scan time:  2.550 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]