Result of FASTA (omim) for
pFN21AE3624
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3624, 605 aa
1>>>pF1KE3624 605 - 605 aa - 605 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3778+/-0.000384; mu= 14.8653+/- 0.024
mean_var=118.2074+/-23.224, 0's: 0 Z-trim(117.0): 227 B-trim: 808 in 1/52
Lambda= 0.117965
statistics sampled from 28312 (28587) to 28312 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.335), width: 16
Scan time: 8.420
The best scores are: opt bits E(85289)
XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 4107 710.4 4.5e-204
XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 4107 710.4 4.5e-204
NP_004196 (OMIM: 604725) ubiquitin carboxyl-termin ( 605) 4107 710.4 4.5e-204
NP_001230688 (OMIM: 604725) ubiquitin carboxyl-ter ( 362) 2399 419.5 9.7e-117
XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin c ( 352) 2381 416.4 8e-116
NP_741994 (OMIM: 604725) ubiquitin carboxyl-termin ( 396) 2381 416.5 8.7e-116
XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 929 169.7 4e-41
XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 929 169.7 4e-41
NP_001269978 (OMIM: 603158) ubiquitin carboxyl-ter (1012) 929 169.7 4.3e-41
XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 929 169.7 4.5e-41
XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 929 169.7 4.5e-41
XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 929 169.7 4.5e-41
XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 929 169.7 4.5e-41
NP_005145 (OMIM: 603158) ubiquitin carboxyl-termin (1118) 929 169.7 4.6e-41
NP_001122082 (OMIM: 603158) ubiquitin carboxyl-ter (1118) 929 169.7 4.6e-41
XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 929 169.7 4.6e-41
XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 929 169.7 4.6e-41
NP_036607 (OMIM: 604729) ubiquitin carboxyl-termin ( 565) 789 145.7 4.1e-34
NP_001014443 (OMIM: 604729) ubiquitin carboxyl-ter ( 565) 789 145.7 4.1e-34
XP_016856529 (OMIM: 604729) PREDICTED: ubiquitin c ( 594) 789 145.7 4.3e-34
NP_001306776 (OMIM: 604729) ubiquitin carboxyl-ter ( 594) 789 145.7 4.3e-34
NP_001306777 (OMIM: 604729) ubiquitin carboxyl-ter ( 551) 557 106.2 3.1e-22
NP_006304 (OMIM: 604731) ubiquitin carboxyl-termin ( 952) 560 106.9 3.3e-22
XP_006719781 (OMIM: 604731) PREDICTED: ubiquitin c ( 775) 554 105.8 5.7e-22
XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 554 105.8 6.2e-22
XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 554 105.8 6.2e-22
NP_001239007 (OMIM: 604731) ubiquitin carboxyl-ter ( 981) 554 105.9 6.8e-22
NP_955475 (OMIM: 603486) ubiquitin carboxyl-termin ( 916) 548 104.8 1.3e-21
NP_003354 (OMIM: 603486) ubiquitin carboxyl-termin ( 963) 539 103.3 4e-21
XP_011522361 (OMIM: 604334) PREDICTED: ubiquitin c ( 786) 524 100.7 2e-20
XP_011522360 (OMIM: 604334) PREDICTED: ubiquitin c (1031) 524 100.8 2.4e-20
XP_011522359 (OMIM: 604334) PREDICTED: ubiquitin c (1384) 524 100.9 3.1e-20
NP_001291213 (OMIM: 604334) ubiquitin carboxyl-ter (1406) 524 100.9 3.1e-20
NP_004496 (OMIM: 604334) ubiquitin carboxyl-termin (1406) 524 100.9 3.1e-20
XP_011522356 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20
XP_011522354 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20
XP_011522352 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20
XP_016880779 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20
XP_011522358 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20
XP_011522355 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20
XP_011522357 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20
XP_011522353 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20
XP_016880723 (OMIM: 607740) PREDICTED: ubiquitin c (1288) 521 100.3 4.1e-20
NP_004642 (OMIM: 300050) ubiquitin carboxyl-termin ( 963) 519 99.9 4.2e-20
XP_011523681 (OMIM: 607740) PREDICTED: ubiquitin c (1327) 521 100.4 4.2e-20
XP_016880722 (OMIM: 607740) PREDICTED: ubiquitin c (1558) 521 100.4 4.8e-20
XP_011523680 (OMIM: 607740) PREDICTED: ubiquitin c (1572) 521 100.4 4.8e-20
XP_011523678 (OMIM: 607740) PREDICTED: ubiquitin c (1601) 521 100.4 4.9e-20
NP_115971 (OMIM: 607740) ubiquitin carboxyl-termin (1604) 521 100.4 4.9e-20
XP_011523677 (OMIM: 607740) PREDICTED: ubiquitin c (1608) 521 100.4 4.9e-20
>>XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin carbo (605 aa)
initn: 4107 init1: 4107 opt: 4107 Z-score: 3784.8 bits: 710.4 E(85289): 4.5e-204
Smith-Waterman score: 4107; 100.0% identity (100.0% similar) in 605 aa overlap (1-605:1-605)
10 20 30 40 50 60
pF1KE3 MSQLSSTLKRYTESARYTDAHYAKSGYGAYTPSSYGANLAASLLEKEKLGFKPVPTSSFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSQLSSTLKRYTESARYTDAHYAKSGYGAYTPSSYGANLAASLLEKEKLGFKPVPTSSFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TRPRTYGPSSLLDYDRGRPLLRPDITGGGKRAESQTRGTERPLGSGLSGGSGFPYGVTNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TRPRTYGPSSLLDYDRGRPLLRPDITGGGKRAESQTRGTERPLGSGLSGGSGFPYGVTNN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CLSYLPINAYDQGVTLTQKLDSQSDLARDFSSLRTSDSYRIDPRNLGRSPMLARTRKELC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CLSYLPINAYDQGVTLTQKLDSQSDLARDFSSLRTSDSYRIDPRNLGRSPMLARTRKELC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TLQGLYQTASCPEYLVDYLENYGRKGSASQVPSQAPPSRVPEIISPTYRPIGRYTLWETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLQGLYQTASCPEYLVDYLENYGRKGSASQVPSQAPPSRVPEIISPTYRPIGRYTLWETG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 KGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 MRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 FLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 GRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS
550 560 570 580 590 600
pF1KE3 PPSRM
:::::
XP_005 PPSRM
>>XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin carbo (605 aa)
initn: 4107 init1: 4107 opt: 4107 Z-score: 3784.8 bits: 710.4 E(85289): 4.5e-204
Smith-Waterman score: 4107; 100.0% identity (100.0% similar) in 605 aa overlap (1-605:1-605)
10 20 30 40 50 60
pF1KE3 MSQLSSTLKRYTESARYTDAHYAKSGYGAYTPSSYGANLAASLLEKEKLGFKPVPTSSFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSQLSSTLKRYTESARYTDAHYAKSGYGAYTPSSYGANLAASLLEKEKLGFKPVPTSSFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TRPRTYGPSSLLDYDRGRPLLRPDITGGGKRAESQTRGTERPLGSGLSGGSGFPYGVTNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TRPRTYGPSSLLDYDRGRPLLRPDITGGGKRAESQTRGTERPLGSGLSGGSGFPYGVTNN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CLSYLPINAYDQGVTLTQKLDSQSDLARDFSSLRTSDSYRIDPRNLGRSPMLARTRKELC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CLSYLPINAYDQGVTLTQKLDSQSDLARDFSSLRTSDSYRIDPRNLGRSPMLARTRKELC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TLQGLYQTASCPEYLVDYLENYGRKGSASQVPSQAPPSRVPEIISPTYRPIGRYTLWETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLQGLYQTASCPEYLVDYLENYGRKGSASQVPSQAPPSRVPEIISPTYRPIGRYTLWETG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 KGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 MRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 FLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 GRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS
550 560 570 580 590 600
pF1KE3 PPSRM
:::::
XP_005 PPSRM
>>NP_004196 (OMIM: 604725) ubiquitin carboxyl-terminal h (605 aa)
initn: 4107 init1: 4107 opt: 4107 Z-score: 3784.8 bits: 710.4 E(85289): 4.5e-204
Smith-Waterman score: 4107; 100.0% identity (100.0% similar) in 605 aa overlap (1-605:1-605)
10 20 30 40 50 60
pF1KE3 MSQLSSTLKRYTESARYTDAHYAKSGYGAYTPSSYGANLAASLLEKEKLGFKPVPTSSFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSQLSSTLKRYTESARYTDAHYAKSGYGAYTPSSYGANLAASLLEKEKLGFKPVPTSSFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TRPRTYGPSSLLDYDRGRPLLRPDITGGGKRAESQTRGTERPLGSGLSGGSGFPYGVTNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TRPRTYGPSSLLDYDRGRPLLRPDITGGGKRAESQTRGTERPLGSGLSGGSGFPYGVTNN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CLSYLPINAYDQGVTLTQKLDSQSDLARDFSSLRTSDSYRIDPRNLGRSPMLARTRKELC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CLSYLPINAYDQGVTLTQKLDSQSDLARDFSSLRTSDSYRIDPRNLGRSPMLARTRKELC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TLQGLYQTASCPEYLVDYLENYGRKGSASQVPSQAPPSRVPEIISPTYRPIGRYTLWETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TLQGLYQTASCPEYLVDYLENYGRKGSASQVPSQAPPSRVPEIISPTYRPIGRYTLWETG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 KGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 MRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 FLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 GRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS
550 560 570 580 590 600
pF1KE3 PPSRM
:::::
NP_004 PPSRM
>>NP_001230688 (OMIM: 604725) ubiquitin carboxyl-termina (362 aa)
initn: 2381 init1: 2381 opt: 2399 Z-score: 2216.8 bits: 419.5 E(85289): 9.7e-117
Smith-Waterman score: 2399; 97.5% identity (98.1% similar) in 361 aa overlap (245-605:4-362)
220 230 240 250 260 270
pF1KE3 APPSRVPEIISPTYRPIGRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGN
:: .: : : .::::::::::::::::
NP_001 MLVPGSTRPYSKKR--QNSKSAQGLAGLRNLGN
10 20 30
280 290 300 310 320 330
pF1KE3 TCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVV
40 50 60 70 80 90
340 350 360 370 380 390
pF1KE3 SPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDE
100 110 120 130 140 150
400 410 420 430 440 450
pF1KE3 KGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVT
160 170 180 190 200 210
460 470 480 490 500 510
pF1KE3 LMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSK
220 230 240 250 260 270
520 530 540 550 560 570
pF1KE3 LTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFN
280 290 300 310 320 330
580 590 600
pF1KE3 DSSVTPMSSSQVRTSDAYLLFYELASPPSRM
:::::::::::::::::::::::::::::::
NP_001 DSSVTPMSSSQVRTSDAYLLFYELASPPSRM
340 350 360
>>XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin carbo (352 aa)
initn: 2381 init1: 2381 opt: 2381 Z-score: 2200.4 bits: 416.4 E(85289): 8e-116
Smith-Waterman score: 2381; 100.0% identity (100.0% similar) in 347 aa overlap (259-605:6-352)
230 240 250 260 270 280
pF1KE3 RPIGRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNT
::::::::::::::::::::::::::::::
XP_016 MPPPQNSKSAQGLAGLRNLGNTCFMNSILQCLSNT
10 20 30
290 300 310 320 330 340
pF1KE3 RELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP
40 50 60 70 80 90
350 360 370 380 390 400
pF1KE3 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED
100 110 120 130 140 150
410 420 430 440 450 460
pF1KE3 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL
160 170 180 190 200 210
470 480 490 500 510 520
pF1KE3 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL
220 230 240 250 260 270
530 540 550 560 570 580
pF1KE3 REFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRT
280 290 300 310 320 330
590 600
pF1KE3 SDAYLLFYELASPPSRM
:::::::::::::::::
XP_016 SDAYLLFYELASPPSRM
340 350
>>NP_741994 (OMIM: 604725) ubiquitin carboxyl-terminal h (396 aa)
initn: 2381 init1: 2381 opt: 2381 Z-score: 2199.7 bits: 416.5 E(85289): 8.7e-116
Smith-Waterman score: 2381; 100.0% identity (100.0% similar) in 347 aa overlap (259-605:50-396)
230 240 250 260 270 280
pF1KE3 RPIGRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNT
::::::::::::::::::::::::::::::
NP_741 ALAKELRPRSPLSPSLLLSTFVGLLLNKAKNSKSAQGLAGLRNLGNTCFMNSILQCLSNT
20 30 40 50 60 70
290 300 310 320 330 340
pF1KE3 RELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 RELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP
80 90 100 110 120 130
350 360 370 380 390 400
pF1KE3 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED
140 150 160 170 180 190
410 420 430 440 450 460
pF1KE3 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL
200 210 220 230 240 250
470 480 490 500 510 520
pF1KE3 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL
260 270 280 290 300 310
530 540 550 560 570 580
pF1KE3 REFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 REFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRT
320 330 340 350 360 370
590 600
pF1KE3 SDAYLLFYELASPPSRM
:::::::::::::::::
NP_741 SDAYLLFYELASPPSRM
380 390
>>XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa)
initn: 818 init1: 323 opt: 929 Z-score: 859.2 bits: 169.7 E(85289): 4e-41
Smith-Waterman score: 929; 43.0% identity (71.5% similar) in 344 aa overlap (262-601:582-921)
240 250 260 270 280 290
pF1KE3 GRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTREL
:. .:.:::::::::.:::::::: :. .:
XP_016 RENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHL
560 570 580 590 600 610
300 310 320 330 340
pF1KE3 RDYCLQRLYMRDLHHGSN--AHTALV-EEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP
:: . :. :... :: .: . : :::. .....::.. .::..:: : .
XP_016 ADYFNRNCYQDDINR-SNLLGHKGEVAEEFGIIMKALWTGQ-YRYISPKDFKITIGKIND
620 630 640 650 660
350 360 370 380 390 400
pF1KE3 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED
.:.::.:::.::.: ::.::::...:.. : . . :: ::: : . ... :.:. . ..
XP_016 QFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNE
670 680 690 700 710 720
410 420 430 440 450 460
pF1KE3 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL
: : :: ::.::.. : : : .:. : ::::.:. . . ::.::.:::.::. :
XP_016 SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS--KCTLQDCLRLFSKEEKL
730 740 750 760 770 780
470 480 490 500 510 520
pF1KE3 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL
... : .::.:. .::. : ..: .:..:::::: . .:: : :.:::..:::
XP_016 TDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDL
790 800 810 820 830 840
530 540 550 560 570 580
pF1KE3 REFA-SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVR
... . ..: :::..:::: : ::::::::.. . .: :.: :. .: :.:.
XP_016 SQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK
850 860 870 880 890 900
590 600
pF1KE3 TSDAYLLFYELASPPSRM
.: ::.::: .:
XP_016 SSAAYILFYTSLGPRVTDVAT
910 920
>>XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa)
initn: 818 init1: 323 opt: 929 Z-score: 859.2 bits: 169.7 E(85289): 4e-41
Smith-Waterman score: 929; 43.0% identity (71.5% similar) in 344 aa overlap (262-601:582-921)
240 250 260 270 280 290
pF1KE3 GRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTREL
:. .:.:::::::::.:::::::: :. .:
XP_016 RENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHL
560 570 580 590 600 610
300 310 320 330 340
pF1KE3 RDYCLQRLYMRDLHHGSN--AHTALV-EEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP
:: . :. :... :: .: . : :::. .....::.. .::..:: : .
XP_016 ADYFNRNCYQDDINR-SNLLGHKGEVAEEFGIIMKALWTGQ-YRYISPKDFKITIGKIND
620 630 640 650 660
350 360 370 380 390 400
pF1KE3 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED
.:.::.:::.::.: ::.::::...:.. : . . :: ::: : . ... :.:. . ..
XP_016 QFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNE
670 680 690 700 710 720
410 420 430 440 450 460
pF1KE3 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL
: : :: ::.::.. : : : .:. : ::::.:. . . ::.::.:::.::. :
XP_016 SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS--KCTLQDCLRLFSKEEKL
730 740 750 760 770 780
470 480 490 500 510 520
pF1KE3 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL
... : .::.:. .::. : ..: .:..:::::: . .:: : :.:::..:::
XP_016 TDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDL
790 800 810 820 830 840
530 540 550 560 570 580
pF1KE3 REFA-SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVR
... . ..: :::..:::: : ::::::::.. . .: :.: :. .: :.:.
XP_016 SQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK
850 860 870 880 890 900
590 600
pF1KE3 TSDAYLLFYELASPPSRM
.: ::.::: .:
XP_016 SSAAYILFYTSLGPRVTDVAT
910 920
>>NP_001269978 (OMIM: 603158) ubiquitin carboxyl-termina (1012 aa)
initn: 818 init1: 323 opt: 929 Z-score: 858.7 bits: 169.7 E(85289): 4.3e-41
Smith-Waterman score: 929; 43.0% identity (71.5% similar) in 344 aa overlap (262-601:666-1005)
240 250 260 270 280 290
pF1KE3 GRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTREL
:. .:.:::::::::.:::::::: :. .:
NP_001 RENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHL
640 650 660 670 680 690
300 310 320 330 340
pF1KE3 RDYCLQRLYMRDLHHGSN--AHTALV-EEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP
:: . :. :... :: .: . : :::. .....::.. .::..:: : .
NP_001 ADYFNRNCYQDDINR-SNLLGHKGEVAEEFGIIMKALWTGQ-YRYISPKDFKITIGKIND
700 710 720 730 740 750
350 360 370 380 390 400
pF1KE3 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED
.:.::.:::.::.: ::.::::...:.. : . . :: ::: : . ... :.:. . ..
NP_001 QFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNE
760 770 780 790 800 810
410 420 430 440 450 460
pF1KE3 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL
: : :: ::.::.. : : : .:. : ::::.:. . . ::.::.:::.::. :
NP_001 SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS--KCTLQDCLRLFSKEEKL
820 830 840 850 860 870
470 480 490 500 510 520
pF1KE3 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL
... : .::.:. .::. : ..: .:..:::::: . .:: : :.:::..:::
NP_001 TDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDL
880 890 900 910 920 930
530 540 550 560 570 580
pF1KE3 REFA-SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVR
... . ..: :::..:::: : ::::::::.. . .: :.: :. .: :.:.
NP_001 SQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK
940 950 960 970 980 990
590 600
pF1KE3 TSDAYLLFYELASPPSRM
.: ::.::: .:
NP_001 SSAAYILFYTSLGPRVTDVAT
1000 1010
>>XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa)
initn: 818 init1: 323 opt: 929 Z-score: 858.3 bits: 169.7 E(85289): 4.5e-41
Smith-Waterman score: 929; 43.0% identity (71.5% similar) in 344 aa overlap (262-601:743-1082)
240 250 260 270 280 290
pF1KE3 GRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTREL
:. .:.:::::::::.:::::::: :. .:
XP_016 RENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHL
720 730 740 750 760 770
300 310 320 330 340
pF1KE3 RDYCLQRLYMRDLHHGSN--AHTALV-EEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP
:: . :. :... :: .: . : :::. .....::.. .::..:: : .
XP_016 ADYFNRNCYQDDINR-SNLLGHKGEVAEEFGIIMKALWTGQ-YRYISPKDFKITIGKIND
780 790 800 810 820 830
350 360 370 380 390 400
pF1KE3 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED
.:.::.:::.::.: ::.::::...:.. : . . :: ::: : . ... :.:. . ..
XP_016 QFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNE
840 850 860 870 880 890
410 420 430 440 450 460
pF1KE3 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL
: : :: ::.::.. : : : .:. : ::::.:. . . ::.::.:::.::. :
XP_016 SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS--KCTLQDCLRLFSKEEKL
900 910 920 930 940
470 480 490 500 510 520
pF1KE3 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL
... : .::.:. .::. : ..: .:..:::::: . .:: : :.:::..:::
XP_016 TDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDL
950 960 970 980 990 1000
530 540 550 560 570 580
pF1KE3 REFA-SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVR
... . ..: :::..:::: : ::::::::.. . .: :.: :. .: :.:.
XP_016 SQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK
1010 1020 1030 1040 1050 1060
590 600
pF1KE3 TSDAYLLFYELASPPSRM
.: ::.::: .:
XP_016 SSAAYILFYTSLGPRVTDVAT
1070 1080
605 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:21:35 2016 done: Sun Nov 6 23:21:36 2016
Total Scan time: 8.420 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]