Result of FASTA (omim) for
pFN21AE3619
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3619, 194 aa
1>>>pF1KE3619 194 - 194 aa - 194 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8910+/-0.000331; mu= 15.3268+/- 0.021
mean_var=58.0371+/-11.671, 0's: 0 Z-trim(115.2): 44 B-trim: 1521 in 1/54
Lambda= 0.168353
statistics sampled from 25499 (25544) to 25499 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.299), width: 16
Scan time: 5.480
The best scores are: opt bits E(85289)
NP_005784 (OMIM: 608294) nucleoside diphosphate ki ( 194) 1315 327.2 1e-89
XP_016861002 (OMIM: 608294) PREDICTED: nucleoside ( 190) 1276 317.7 7.2e-87
XP_016861003 (OMIM: 608294) PREDICTED: nucleoside ( 186) 1265 315.0 4.5e-86
NP_001295356 (OMIM: 608294) nucleoside diphosphate ( 186) 1265 315.0 4.5e-86
NP_001295355 (OMIM: 608294) nucleoside diphosphate ( 186) 1265 315.0 4.5e-86
NP_001295357 (OMIM: 608294) nucleoside diphosphate ( 186) 1265 315.0 4.5e-86
NP_001295363 (OMIM: 608294) nucleoside diphosphate ( 141) 990 248.2 4.6e-66
XP_016861007 (OMIM: 608294) PREDICTED: nucleoside ( 111) 769 194.4 5.4e-50
XP_016861001 (OMIM: 608294) PREDICTED: nucleoside ( 264) 757 191.7 8.4e-49
XP_016861006 (OMIM: 608294) PREDICTED: nucleoside ( 114) 752 190.3 9.7e-49
XP_016861005 (OMIM: 608294) PREDICTED: nucleoside ( 129) 469 121.6 5.3e-28
NP_001295359 (OMIM: 608294) nucleoside diphosphate ( 171) 469 121.7 6.7e-28
NP_001295364 (OMIM: 608294) nucleoside diphosphate ( 119) 419 109.4 2.2e-24
XP_016861000 (OMIM: 608294) PREDICTED: nucleoside ( 121) 419 109.4 2.3e-24
XP_016861004 (OMIM: 608294) PREDICTED: nucleoside ( 163) 419 109.5 2.9e-24
NP_001295362 (OMIM: 608294) nucleoside diphosphate ( 163) 419 109.5 2.9e-24
NP_001295360 (OMIM: 608294) nucleoside diphosphate ( 163) 419 109.5 2.9e-24
XP_005272156 (OMIM: 603575) PREDICTED: nucleoside ( 148) 353 93.5 1.8e-19
XP_006714779 (OMIM: 603575) PREDICTED: nucleoside ( 149) 353 93.5 1.8e-19
NP_003542 (OMIM: 603575) nucleoside diphosphate ki ( 212) 353 93.6 2.4e-19
XP_016865434 (OMIM: 603575) PREDICTED: nucleoside ( 278) 353 93.6 3e-19
NP_932076 (OMIM: 613465) nucleoside diphosphate ki ( 340) 317 84.9 1.5e-16
XP_016856588 (OMIM: 613465) PREDICTED: nucleoside ( 367) 317 84.9 1.6e-16
NP_037462 (OMIM: 613465) nucleoside diphosphate ki ( 376) 317 85.0 1.7e-16
NP_057700 (OMIM: 607421,610852) thioredoxin domain ( 588) 274 74.6 3.3e-13
XP_005245163 (OMIM: 613465) PREDICTED: nucleoside ( 252) 260 71.0 1.8e-12
XP_016856589 (OMIM: 613465) PREDICTED: nucleoside ( 252) 260 71.0 1.8e-12
NP_002504 (OMIM: 601817) nucleoside diphosphate ki ( 169) 251 68.7 5.8e-12
NP_001018147 (OMIM: 156491) nucleoside diphosphate ( 152) 239 65.8 4e-11
NP_001018148 (OMIM: 156491) nucleoside diphosphate ( 152) 239 65.8 4e-11
NP_002503 (OMIM: 156491) nucleoside diphosphate ki ( 152) 239 65.8 4e-11
NP_001018149 (OMIM: 156491) nucleoside diphosphate ( 152) 239 65.8 4e-11
NP_005000 (OMIM: 601818) nucleoside diphosphate ki ( 187) 231 63.9 1.8e-10
NP_000260 (OMIM: 156490,256700) nucleoside diphosp ( 152) 223 61.9 5.9e-10
NP_937818 (OMIM: 156490,256700) nucleoside diphosp ( 177) 223 61.9 6.7e-10
NP_001273368 (OMIM: 601818) nucleoside diphosphate ( 117) 186 52.8 2.4e-07
NP_001273365 (OMIM: 601818) nucleoside diphosphate ( 117) 186 52.8 2.4e-07
NP_001273369 (OMIM: 601818) nucleoside diphosphate ( 117) 186 52.8 2.4e-07
NP_001273367 (OMIM: 601818) nucleoside diphosphate ( 117) 186 52.8 2.4e-07
XP_005255389 (OMIM: 601817) PREDICTED: nucleoside ( 165) 184 52.4 4.5e-07
NP_001273364 (OMIM: 601818) nucleoside diphosphate ( 173) 160 46.6 2.6e-05
NP_001273362 (OMIM: 601818) nucleoside diphosphate ( 153) 127 38.6 0.0062
NP_001185611 (OMIM: 156491) nucleoside diphosphate ( 82) 123 37.4 0.0072
>>NP_005784 (OMIM: 608294) nucleoside diphosphate kinase (194 aa)
initn: 1315 init1: 1315 opt: 1315 Z-score: 1731.6 bits: 327.2 E(85289): 1e-89
Smith-Waterman score: 1315; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
130 140 150 160 170 180
190
pF1KE3 GVHYVAGTGGLGPA
::::::::::::::
NP_005 GVHYVAGTGGLGPA
190
>>XP_016861002 (OMIM: 608294) PREDICTED: nucleoside diph (190 aa)
initn: 1276 init1: 1276 opt: 1276 Z-score: 1680.5 bits: 317.7 E(85289): 7.2e-87
Smith-Waterman score: 1276; 100.0% identity (100.0% similar) in 188 aa overlap (7-194:3-190)
10 20 30 40 50 60
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
120 130 140 150 160 170
190
pF1KE3 GVHYVAGTGGLGPA
::::::::::::::
XP_016 GVHYVAGTGGLGPA
180 190
>>XP_016861003 (OMIM: 608294) PREDICTED: nucleoside diph (186 aa)
initn: 1265 init1: 1265 opt: 1265 Z-score: 1666.2 bits: 315.0 E(85289): 4.5e-86
Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 186 aa overlap (9-194:1-186)
10 20 30 40 50 60
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
120 130 140 150 160 170
190
pF1KE3 GVHYVAGTGGLGPA
::::::::::::::
XP_016 GVHYVAGTGGLGPA
180
>>NP_001295356 (OMIM: 608294) nucleoside diphosphate kin (186 aa)
initn: 1265 init1: 1265 opt: 1265 Z-score: 1666.2 bits: 315.0 E(85289): 4.5e-86
Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 186 aa overlap (9-194:1-186)
10 20 30 40 50 60
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
120 130 140 150 160 170
190
pF1KE3 GVHYVAGTGGLGPA
::::::::::::::
NP_001 GVHYVAGTGGLGPA
180
>>NP_001295355 (OMIM: 608294) nucleoside diphosphate kin (186 aa)
initn: 1265 init1: 1265 opt: 1265 Z-score: 1666.2 bits: 315.0 E(85289): 4.5e-86
Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 186 aa overlap (9-194:1-186)
10 20 30 40 50 60
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
120 130 140 150 160 170
190
pF1KE3 GVHYVAGTGGLGPA
::::::::::::::
NP_001 GVHYVAGTGGLGPA
180
>>NP_001295357 (OMIM: 608294) nucleoside diphosphate kin (186 aa)
initn: 1265 init1: 1265 opt: 1265 Z-score: 1666.2 bits: 315.0 E(85289): 4.5e-86
Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 186 aa overlap (9-194:1-186)
10 20 30 40 50 60
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
120 130 140 150 160 170
190
pF1KE3 GVHYVAGTGGLGPA
::::::::::::::
NP_001 GVHYVAGTGGLGPA
180
>>NP_001295363 (OMIM: 608294) nucleoside diphosphate kin (141 aa)
initn: 990 init1: 990 opt: 990 Z-score: 1307.0 bits: 248.2 E(85289): 4.6e-66
Smith-Waterman score: 990; 100.0% identity (100.0% similar) in 141 aa overlap (54-194:1-141)
30 40 50 60 70 80
pF1KE3 ALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWRKEDCQRFYREHEGRFFYQRLVEF
::::::::::::::::::::::::::::::
NP_001 MRELLWRKEDCQRFYREHEGRFFYQRLVEF
10 20 30
90 100 110 120 130 140
pF1KE3 MASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVV
40 50 60 70 80 90
150 160 170 180 190
pF1KE3 SASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEGGVHYVAGTGGLGPA
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEGGVHYVAGTGGLGPA
100 110 120 130 140
>>XP_016861007 (OMIM: 608294) PREDICTED: nucleoside diph (111 aa)
initn: 769 init1: 769 opt: 769 Z-score: 1018.5 bits: 194.4 E(85289): 5.4e-50
Smith-Waterman score: 769; 100.0% identity (100.0% similar) in 111 aa overlap (84-194:1-111)
60 70 80 90 100 110
pF1KE3 MRELLWRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVF
::::::::::::::::::::::::::::::
XP_016 MASGPIRAYILAHKDAIQLWRTLMGPTRVF
10 20 30
120 130 140 150 160 170
pF1KE3 RARHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RARHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGP
40 50 60 70 80 90
180 190
pF1KE3 VCYSPEGGVHYVAGTGGLGPA
:::::::::::::::::::::
XP_016 VCYSPEGGVHYVAGTGGLGPA
100 110
>>XP_016861001 (OMIM: 608294) PREDICTED: nucleoside diph (264 aa)
initn: 757 init1: 757 opt: 757 Z-score: 997.2 bits: 191.7 E(85289): 8.4e-49
Smith-Waterman score: 757; 100.0% identity (100.0% similar) in 109 aa overlap (86-194:156-264)
60 70 80 90 100 110
pF1KE3 ELLWRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRA
::::::::::::::::::::::::::::::
XP_016 RAAQGAPEGPCEGRRLSSVAPGGRALCRRTSGPIRAYILAHKDAIQLWRTLMGPTRVFRA
130 140 150 160 170 180
120 130 140 150 160 170
pF1KE3 RHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVC
190 200 210 220 230 240
180 190
pF1KE3 YSPEGGVHYVAGTGGLGPA
:::::::::::::::::::
XP_016 YSPEGGVHYVAGTGGLGPA
250 260
>>XP_016861006 (OMIM: 608294) PREDICTED: nucleoside diph (114 aa)
initn: 752 init1: 752 opt: 752 Z-score: 996.0 bits: 190.3 E(85289): 9.7e-49
Smith-Waterman score: 752; 100.0% identity (100.0% similar) in 108 aa overlap (87-194:7-114)
60 70 80 90 100 110
pF1KE3 LLWRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRAR
::::::::::::::::::::::::::::::
XP_016 MTQNLGGPIRAYILAHKDAIQLWRTLMGPTRVFRAR
10 20 30
120 130 140 150 160 170
pF1KE3 HVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCY
40 50 60 70 80 90
180 190
pF1KE3 SPEGGVHYVAGTGGLGPA
::::::::::::::::::
XP_016 SPEGGVHYVAGTGGLGPA
100 110
194 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:27:53 2016 done: Sun Nov 6 23:27:54 2016
Total Scan time: 5.480 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]